| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 17,893,039 – 17,893,136 |
| Length | 97 |
| Max. P | 0.518264 |
| Location | 17,893,039 – 17,893,136 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 80.87 |
| Mean single sequence MFE | -16.72 |
| Consensus MFE | -11.47 |
| Energy contribution | -11.50 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.25 |
| Structure conservation index | 0.69 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.518264 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17893039 97 - 20766785 GUCA-GGGUGUGCCAAGUCGAAUAGCAUGCAAAUGUUUAUGCAUAUAAAUAAAUUAAUGUGCAAAUGCGAAA-AAAUUGUACAGCACGAAAAGUCGAUG ....-.((....))..(((((...(((((........)))))...............(((((...(((((..-...)))))..))))).....))))). ( -18.30) >DroEre_CAF1 10158 79 - 1 GUCA-GGGUGUGCCAAGUCGAACAGCAUGCAAAUGUUUAUGCAUAUAAAUAAAUUAAUGUGCAAAUGCGA-------------------AAAGUCGAUA ....-.((....))..(((((...(((((((...((((((........)))))).....))))..)))..-------------------....))))). ( -16.10) >DroYak_CAF1 10447 98 - 1 GUCA-GGGUGUGCCAAGUCGAACAGCAUGCAAAUGUUUAUGCAUAUAAAUAAAUUAAUGUGCAAAUGCGAAAAAAACUUUACAGCACGAAAAGUCGAUA ....-.((....))..(((((....(.(((.........(((((((..........)))))))..((..((......))..))))).).....))))). ( -16.30) >DroMoj_CAF1 13778 92 - 1 -----GGGUAUGCCAAGUUGAAAAGCAUGCAAAUAUGUAUGCAUAUAAAUAAAUUAAUGUGCAAAUGCGAAA-AGCUC-AAAAACGAAAAAUAACAAGG -----.((....))..((((....(((((((....)))))))...............(((......((....-.))..-....))).....)))).... ( -15.00) >DroAna_CAF1 39106 90 - 1 GUCA-GGGUGUGCCAAGUCGAAUAGCAUGCAAAUGUUUAUGCAUAUAAAUAAAUUAAUGUGCAAAUGCGAAA-AAAUUGUACGGCACGAGAA------- ....-...((((((.........(((((....)))))..(((((((..........)))))))..(((((..-...))))).))))))....------- ( -18.70) >DroPer_CAF1 36517 98 - 1 GUCAAGGGUGUGCCAAGUCGAAUAGCAUGCAAAUGUUUAUGCAUAUAAAUAAAUUAAUGUGCAAAUGCGAAA-AAAUUGUACAACUAGAAAAGCCAAUG .((.((..(((((....(((...(((((....)))))..(((((((..........)))))))....)))..-.....))))).)).)).......... ( -15.90) >consensus GUCA_GGGUGUGCCAAGUCGAAUAGCAUGCAAAUGUUUAUGCAUAUAAAUAAAUUAAUGUGCAAAUGCGAAA_AAAUUGUACAGCACGAAAAGUCGAUG .......((((((...........))))))...(((...(((((((..........)))))))...))).............................. (-11.47 = -11.50 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:18 2006