| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 17,892,180 – 17,892,277 |
| Length | 97 |
| Max. P | 0.535110 |
| Location | 17,892,180 – 17,892,277 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 76.95 |
| Mean single sequence MFE | -18.32 |
| Consensus MFE | -11.86 |
| Energy contribution | -12.42 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.00 |
| SVM RNA-class probability | 0.535110 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17892180 97 - 20766785 CAACUAGGUUGUUUUCUACUUGAUACCCUUUAAUGGGGUAUUUUAAUUUAUAAACCUGAUGCAAUAGAAAAAUUCUAAGCUGAGCGACUUCAAUCAU------ .....(((((((((.......((((((((.....))))))))..................((..((((.....)))).)).))))))))).......------ ( -18.50) >DroSec_CAF1 9405 96 - 1 CAACUAAGUUGUUUUCUACUUGAUACCCUUUAAUGGGGUAUUUUAAUUUACAAACCUGAUGCA-UAGAAAAAUUCUAAGCUAAGCGACUUCAAUCAU------ .....(((((((((.......((((((((.....))))))))..................((.-((((.....)))).)).))))))))).......------ ( -20.50) >DroSim_CAF1 9789 96 - 1 CAACUAGGUUGUUUUCUACAUGAUACCCUUUAAUGGGGUAUUUUAACUUACAAACCUGAUGCA-UAGAAAAAUUCUUAGCUAAGCGACUUCAAUCAU------ ....((((((...........((((((((.....))))))))..........)))))).(((.-(((..((....))..))).)))...........------ ( -19.10) >DroEre_CAF1 9376 95 - 1 CAACUAGGCU-UGUUCUACUCGAUACUCUUUAAUGGUGUAUUUAAAAUGGCACACCUGCUGCA-UAGAAAACUUCUGAGCUGAAA------AAUCGUUAACGC .(((((((..-((((......(((((.((.....)).)))))......))))..))))..((.-((((.....)))).)).....------....)))..... ( -13.60) >DroYak_CAF1 9622 81 - 1 CAACCAGGUUGUUUUCUACUCGAUACUCUUUUAUGGGGUAUCUAAACUUGUGCACCUGAUGCA-UAGAAAACUUC----------------AAUUAUU----- ......((..(((((((....((((((((.....)))))))).......(((((.....))))-)))))))).))----------------.......----- ( -19.90) >consensus CAACUAGGUUGUUUUCUACUUGAUACCCUUUAAUGGGGUAUUUUAACUUACAAACCUGAUGCA_UAGAAAAAUUCUAAGCUAAGCGACUUCAAUCAU______ ....((((((...........((((((((.....))))))))..........))))))............................................. (-11.86 = -12.42 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:17 2006