Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 17,891,949 – 17,892,047 |
Length | 98 |
Max. P | 0.621428 |
Location | 17,891,949 – 17,892,047 |
---|---|
Length | 98 |
Sequences | 4 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 70.99 |
Mean single sequence MFE | -27.78 |
Consensus MFE | -7.09 |
Energy contribution | -9.15 |
Covariance contribution | 2.06 |
Combinations/Pair | 1.17 |
Mean z-score | -3.66 |
Structure conservation index | 0.26 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.621428 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17891949 98 - 20766785 GGCAUUAUAGUUUU---UCAAUUCCUUGUCAAAUU--AAGAUUAAAGUUUGACCAA--------------ACUUUUC-AGGGUAUUUAAGCUUCGGAUUGUUUGGUCAAA-CUUUAUUC .......((((((.---.(((....)))..)))))--).((.((((((((((((((--------------((..(((-..(((......)))..)))..)))))))))))-))))).)) ( -31.80) >DroSec_CAF1 9172 100 - 1 GGCAGAAUAGUUUU---UCAGUUCUGUGUUAAAUACAAAAAAUAAAGUUUGACCAA--------------ACUUUUC-AGGGUAUUUAAGCUUCGGCUAGUUUUGUCCAA-CUUUAUUC .(((((((.(....---.).))))))).............(((((((((.(((.((--------------(((..((-..(((......)))..))..))))).))).))-))))))). ( -25.50) >DroSim_CAF1 9568 98 - 1 AGCAGAGAAGUUUU---UUAAUUCUGUCUCAAAUU--AAAAAUAAAGUUUGACCAA--------------ACUUUUC-AGGGUAUUUAAGCUUCGGGUUGUUUGGUCCAA-CUUUAUUC ....((((((....---......)).)))).....--...(((((((((.((((((--------------((..(((-..(((......)))..)))..)))))))).))-))))))). ( -28.10) >DroYak_CAF1 9388 116 - 1 UGCACUAAAGUUCUUAUUCACUUC---AUAAAAAAUGAAAAAAGUUGUUUGACCAAACUAGUUUGCCUAGAACUUUAAAGGGCAUUUAAGCUUCGGCUUGCUGCGUCCAACUUUUUUCC ........................---.........(((((((((((...(((((........(((((...........)))))..(((((....))))).)).)))))))))))))). ( -25.70) >consensus GGCAGAAAAGUUUU___UCAAUUCUGUGUCAAAUA__AAAAAUAAAGUUUGACCAA______________ACUUUUC_AGGGUAUUUAAGCUUCGGCUUGUUUGGUCCAA_CUUUAUUC ........................................(((((((((.((((((..............((((.....))))...(((((....))))).)))))).)).))))))). ( -7.09 = -9.15 + 2.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:16 2006