| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 17,885,216 – 17,885,318 |
| Length | 102 |
| Max. P | 0.849323 |
| Location | 17,885,216 – 17,885,318 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 76.41 |
| Mean single sequence MFE | -31.07 |
| Consensus MFE | -19.05 |
| Energy contribution | -17.83 |
| Covariance contribution | -1.22 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.78 |
| SVM RNA-class probability | 0.849323 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17885216 102 - 20766785 UUUUUUUGUAAUCCUCUAGAUUCAGCGAACGUUUGGAGACUGUUUCAGCUGGUUUGCUAGCCGGCUUGGGCACUGAAUUCGU---AUUGACUAAAAAAG-------AAAAUG (((((((.((.((.....(((((((.........(....)((((..((((((((....))))))))..)))))))))))...---...)).)).)))))-------)).... ( -24.30) >DroGri_CAF1 3155 106 - 1 UCUUUUUGUAAUCUUCCAGGUUGAGUGAACGUUUGGACACCGUUUCGGUUGGCUUGUUCGCCGGUUUGGGCAACGCAUUGGCGCUGUUCACUAUAAA------AGGUAAAAU .((((((((((((.....)))).((((((((((..(((((((...))))((((......)))))))..)))..(((....)))..))))))))))))------)))...... ( -31.90) >DroEre_CAF1 2446 103 - 1 UUUUUUUGUAAUCCUCCAGAUUCAGCGAACGUUUGGAGACAGUUUCAGCUGGUUUGUUAGCCGGUUUGGGCACUGAAUUCGU---AUUAACUACAAAAG----A--CAAAUU .(((((((((...((((((((.........)))))))).(((((((((((((((....)))))).))))).)))).......---......))))))))----)--...... ( -28.50) >DroYak_CAF1 2445 104 - 1 UUUUUUUGUAAUCCUCCAGAUUCAACGAACGUUUGGAGACUGUUUCAGCUGGUUUGCUAGCCGGUUUGGGCACUGAAUUCGU---AUUAACUAAAACAA----AG-GAAAUA (((((((((....((((((((.........))))))))..((((..((((((((....))))))))..))))..........---..........))))----))-)))... ( -26.30) >DroMoj_CAF1 2636 110 - 1 UCUUUUUGUAAUCUUCCAGGUUCAGUGAACGCUUGGACACCGUCUCGGUUGGCUUGCUCGCCGGCUUGGGCAGAGCAUUCGUGCUAUUCACUGCAAUUGG--AAGGCGAAUU ....(((((...(((((((...(((((((.(((.((((...)))).)))((((.((((((((......))).))))).....)))))))))))...))))--)))))))).. ( -38.80) >DroAna_CAF1 31001 111 - 1 UCUUUUUGUAGUCCUCCAAAUUUAAGGACCGUUUUGAGACUGUUUCGGCUGGCUUGCUCGCCGGCUUGGGCACGGAAUUCGUGCUGUUAACUGGAAAUGUUCAAG-AUGAUA ..........(((((.........)))))(((((((((...((((((((((((......)))))))..((((((.....))))))........))))).))))))-)))... ( -36.60) >consensus UCUUUUUGUAAUCCUCCAGAUUCAGCGAACGUUUGGAGACUGUUUCAGCUGGCUUGCUAGCCGGCUUGGGCACUGAAUUCGU___AUUAACUAAAAAAG____AG_AAAAUU .............((((((((.........))))))))...(((..(((((((......)))))))..)))......................................... (-19.05 = -17.83 + -1.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:15 2006