Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,914,803 – 2,914,923 |
Length | 120 |
Max. P | 0.796311 |
Location | 2,914,803 – 2,914,923 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.92 |
Mean single sequence MFE | -38.30 |
Consensus MFE | -31.24 |
Energy contribution | -31.28 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.16 |
Mean z-score | -1.59 |
Structure conservation index | 0.82 |
SVM decision value | 0.60 |
SVM RNA-class probability | 0.796311 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2914803 120 + 20766785 AAAACUAACCGCGGAUCUGGUAAAUGCCAUUGCGGAGGCUAACUCAGGAAGGAAAUACGGAGCCGAAUGGGUUCCGUCGCUGGGACAAGCCCUGGAAGAGGUGCAUAUAACAUCGUCCAG ........((((((...((((....)))))))))).((((..(((((((........(((((((.....))))))))).)))))...))))(((((...((((.......)))).))))) ( -42.20) >DroSec_CAF1 4000 120 + 1 GAAACUAACCGCGGAUCUGGUAAAUGCCAUUGCGGAGGCUAACUCAGGAAGGAAAUACGGAACCGAAUGGGUUCCGUCGCUGGGACAAGCCCUGGAAGAGGUGCAUAUAACAUCGUCCAG ........((((((...((((....)))))))))).((((..(((((((........(((((((.....))))))))).)))))...))))(((((...((((.......)))).))))) ( -42.20) >DroSim_CAF1 4059 119 + 1 GAAACUAACCGCGGAUCUGGUAAAUGCCAUUGCGGAGGCUAACUCAGGAAGGAAGUACGGAACCGAAUGGGUUCCGUCGCUGGGACAAGCCCUGGAAGA-GUGCAUAUAACAUCGUCCAG ........((((((...((((....)))))))))).((((..(((((((........(((((((.....))))))))).)))))...))))(((((.((-((.......)).)).))))) ( -40.50) >DroEre_CAF1 4368 120 + 1 GAAACUAACCUCAGAUCUCGUAAAUGCCAUUGCGGAGGCUAAUUCUGGAAAGAAAUAUGGGGCCGAGUGGAUUCCGUCGCUGGGACAAGCUCUUGAAGAGGUACAUAUAACAUCUUCCAG .......(((((.(..((((((...(((........)))...((((....)))).))))))..)((((...(((((....)))))...)))).....))))).................. ( -30.50) >DroYak_CAF1 3998 120 + 1 GAAACUAACCGCAGAUCUGGUAAAUGCCAUUGCGGAGGCUAAUUCUGGAAAGAAAUAUGGAGCCGAGUGGGUUCCGUCGCUGGGCCAAGCUCUUGAAGAGGUGCAUAUAACAUCAUCCAG ........((((((...((((....)))))))))).((((..((((....))))..((((((((.....)))))))).....))))..((.(((....))).))................ ( -36.10) >consensus GAAACUAACCGCGGAUCUGGUAAAUGCCAUUGCGGAGGCUAACUCAGGAAGGAAAUACGGAGCCGAAUGGGUUCCGUCGCUGGGACAAGCCCUGGAAGAGGUGCAUAUAACAUCGUCCAG ........((((((...((((....)))))))))).((((..(((((((........(((((((.....))))))))).)))))...))))(((((.((.((.......)).)).))))) (-31.24 = -31.28 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:43 2006