Locus 5618

Sequence ID 2R_DroMel_CAF1
Location 17,882,008 – 17,882,115
Length 107
Max. P 0.801195
window9008

overview

Window 8

Location 17,882,008 – 17,882,115
Length 107
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 91.98
Mean single sequence MFE -34.23
Consensus MFE -31.12
Energy contribution -31.12
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.30
Structure conservation index 0.91
SVM decision value 0.62
SVM RNA-class probability 0.801195
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17882008 107 - 20766785
ACCACCCACCAC-------------UGCGGGGAAAUACCUUGCGGCUGGUGCAGCACGUGCACAUUUUGCCGCGCUGUCGAGCGCAACACUGAAUCACACUUAAAGCAGAGUUGAAAAAA
......((((((-------------(((((((.....)))))))).)))))((((.((.(((.....))))).)))).......((((.(((..............))).))))...... ( -34.04)
>DroSec_CAF1 46976 120 - 1
ACCACCCACCACUGCUUACAUUCACUGCGGGGAAAUACCUUGCGGCUGGUGCAGCACGUGCACAUUUUGCCGCGCUGUCGAGCGCAACACUGAAUCACACUUAAAGCAGAGUUGAAAAAA
......((.(.((((((.........((((((.....))))))(((..(((((.....))))).....)))(((((....)))))..................)))))).).))...... ( -35.60)
>DroSim_CAF1 47339 120 - 1
ACCACCCACCACUGCUUACAUUCACUGCGGGGAAAUACCUUGCGGCUGGUGCAGCACGUGCACAUUUUGCCGCGCUGUCGAGCGCAACACUGAAUCACACUUAAAGCAGAGUUGAAAAAA
......((.(.((((((.........((((((.....))))))(((..(((((.....))))).....)))(((((....)))))..................)))))).).))...... ( -35.60)
>DroEre_CAF1 49408 117 - 1
CCCACCCC---CUGCCCACACUCACUGCGGGGAAAUACCUUGCGGCUGGUGCAGCACGUGCACAUUUUGCCGCGCUGUCGAGCGCAACACUGAAUCACACUUAAAGCAGAGUUGAAAAAA
......((---((((...........)))))).......(((((.((.(.(((((.((.(((.....))))).)))))).))))))).......(((.((((......)))))))..... ( -33.80)
>DroYak_CAF1 46649 117 - 1
CCCACCCC---CUGUCCACAUUCACUGCGGGGAAAUACCUUGCGGCUGGUGCAGCACGUGCACAUUUUGCCGCGCUGUCGAGCGCAACACUGAAUCACACUUAAAGCAGAGUUGAAAAAA
......((---((((...........)))))).......(((((.((.(.(((((.((.(((.....))))).)))))).))))))).......(((.((((......)))))))..... ( -32.10)
>consensus
ACCACCCACCACUGCCCACAUUCACUGCGGGGAAAUACCUUGCGGCUGGUGCAGCACGUGCACAUUUUGCCGCGCUGUCGAGCGCAACACUGAAUCACACUUAAAGCAGAGUUGAAAAAA
.........................(((((((.....)))))))(((.(.(((((.((.(((.....))))).)))))).))).((((.(((..............))).))))...... (-31.12 = -31.12 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:13 2006