Locus 5615

Sequence ID	2R_DroMel_CAF1
Location	17,880,431 – 17,880,538
Length	107
Max. P	0.998441

overview

Window 1

Location	17,880,431 – 17,880,538
Length	107
Sequences	5
Columns	107
Reading direction	forward
Mean pairwise identity	96.07
Mean single sequence MFE	-21.46
Consensus MFE	-20.26
Energy contribution	-20.54
Covariance contribution	0.28
Combinations/Pair	1.08
Mean z-score	-1.55
Structure conservation index	0.94
SVM decision value	1.74
SVM RNA-class probability	0.975140
Prediction	RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17880431 107 + 20766785
CGUGAGAUUUUCGCACCACAAAACACUGAACCGACGCACUUGUGUUAAAUAUUUUUUCUUUCUUUGCCUAUUUGCGUUUAGUAUUUUAUGGGCUUUUUGUUUGCAAC
.(..((......((.(((.((((.(((((((.(((((....)))))...................((......))))))))).)))).)))))......))..)... ( -22.60)
>DroSec_CAF1 45409 106 + 1
CGUGAGAUUUUCGCACCACAAAACACUGAACCGACACACUUGUGUUAAAUAUUU-UUAUUUCUUUGCCUAUUUGCGUUGAGUAUUUAAUGGGCUUUUUGUUUGCAAC
(....)......(((..((((((.........(((((....)))))........-..........((((((((((.....)))...))))))).)))))).)))... ( -20.50)
>DroSim_CAF1 45771 107 + 1
CGUGAGAUUUUCGCACCACAAAACACUGAACCGACACACUUGUGUUAAAUAUUUUUUCUUUCUUUGCCUAUUUGCGUUUAGUAUUUUAUGGGCUUUUUGUUUGCAAC
.(..((......((.(((.((((.(((((((.(((((....)))))...................((......))))))))).)))).)))))......))..)... ( -23.00)
>DroEre_CAF1 47788 106 + 1
CGUGAGAUUUUCGCACCACAAAACACUGAACCGACACACUUGUGUUAAAUAUUUUUGCUUUC-UUGCCUAUUUGCGUUUAGUAUUUUAUGGGCUUUUUGUUUGCAAC
.(..((......((.(((.((((.(((((((((((((....)))))..........((....-..))......).))))))).)))).)))))......))..)... ( -23.40)
>DroYak_CAF1 45057 106 + 1
CGUGAGAUUUUCGCACCACAAAACACUGAACCGACACACUUGUGUUAAAUAUUUUUUCUUUC-UUGCCUAUUUGCGUUUCGUAUUUUAUGGGUUUUUUGUUUUCAAC
.(((((...))))).....((((((..((((((((((....)))))................-..((......))...............)))))..)))))).... ( -17.80)
>consensus
CGUGAGAUUUUCGCACCACAAAACACUGAACCGACACACUUGUGUUAAAUAUUUUUUCUUUCUUUGCCUAUUUGCGUUUAGUAUUUUAUGGGCUUUUUGUUUGCAAC
.(..((......((.(((.((((.(((((((.(((((....)))))...................((......))))))))).)))).)))))......))..)... (-20.26 = -20.54 +   0.28)

alignment

secondary structure

dotplot

Window 2

Location	17,880,431 – 17,880,538
Length	107
Sequences	5
Columns	107
Reading direction	reverse
Mean pairwise identity	96.07
Mean single sequence MFE	-22.12
Consensus MFE	-20.88
Energy contribution	-21.68
Covariance contribution	0.80
Combinations/Pair	1.00
Mean z-score	-2.00
Structure conservation index	0.94
SVM decision value	3.10
SVM RNA-class probability	0.998441
Prediction	RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17880431 107 - 20766785
GUUGCAAACAAAAAGCCCAUAAAAUACUAAACGCAAAUAGGCAAAGAAAGAAAAAAUAUUUAACACAAGUGCGUCGGUUCAGUGUUUUGUGGUGCGAAAAUCUCACG
..............((((((((((((((.(((((......)).....................((....)).....))).)))))))))))).))............ ( -20.80)
>DroSec_CAF1 45409 106 - 1
GUUGCAAACAAAAAGCCCAUUAAAUACUCAACGCAAAUAGGCAAAGAAAUAA-AAAUAUUUAACACAAGUGUGUCGGUUCAGUGUUUUGUGGUGCGAAAAUCUCACG
..............((((((.(((((((.(((((......))..........-.........((((....))))..))).))))))).)))).))............ ( -20.90)
>DroSim_CAF1 45771 107 - 1
GUUGCAAACAAAAAGCCCAUAAAAUACUAAACGCAAAUAGGCAAAGAAAGAAAAAAUAUUUAACACAAGUGUGUCGGUUCAGUGUUUUGUGGUGCGAAAAUCUCACG
..............((((((((((((((.(((((......))....................((((....))))..))).)))))))))))).))............ ( -24.50)
>DroEre_CAF1 47788 106 - 1
GUUGCAAACAAAAAGCCCAUAAAAUACUAAACGCAAAUAGGCAA-GAAAGCAAAAAUAUUUAACACAAGUGUGUCGGUUCAGUGUUUUGUGGUGCGAAAAUCUCACG
..............((((((((((((((.(((..(((((.((..-....)).....))))).((((....))))..))).)))))))))))).))............ ( -24.80)
>DroYak_CAF1 45057 106 - 1
GUUGAAAACAAAAAACCCAUAAAAUACGAAACGCAAAUAGGCAA-GAAAGAAAAAAUAUUUAACACAAGUGUGUCGGUUCAGUGUUUUGUGGUGCGAAAAUCUCACG
................(((((((((((..(((((......))..-.................((((....))))..)))..)))))))))))............... ( -19.60)
>consensus
GUUGCAAACAAAAAGCCCAUAAAAUACUAAACGCAAAUAGGCAAAGAAAGAAAAAAUAUUUAACACAAGUGUGUCGGUUCAGUGUUUUGUGGUGCGAAAAUCUCACG
..............((((((((((((((.(((((......))....................((((....))))..))).)))))))))))).))............ (-20.88 = -21.68 +   0.80)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:07 2006