Locus 5613

Sequence ID 2R_DroMel_CAF1
Location 17,878,123 – 17,878,219
Length 96
Max. P 0.664569
window8994

overview

Window 4

Location 17,878,123 – 17,878,219
Length 96
Sequences 4
Columns 96
Reading direction forward
Mean pairwise identity 87.39
Mean single sequence MFE -32.10
Consensus MFE -27.65
Energy contribution -28.15
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -1.51
Structure conservation index 0.86
SVM decision value 0.28
SVM RNA-class probability 0.664569
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17878123 96 + 20766785
UCGCCCAAGGGUUGCAGCAUCCUUGAGGGUUGGCCCGGGCAACAGGCAGUGCCACCCUCCCGGCCAUCCGCCCAACCUCCCAACCCGCCCACCAAC
..((.(((((((......))))))).(((((((...((((....(((...)))........((....))))))......)))))))))........ ( -32.00)
>DroSim_CAF1 43481 96 + 1
UCGCCCAAGGGUUGCAGCAUCCUUGAGGGUUGGCCCGGGCAACAGGCCGUGCCACCCUCCCGGCCAUCCUCCCAGCCUCCCAAACCGCCCACCAAC
..((.(((((((......))))))).(((..(((..(((.....(((((.(........)))))).....))).))).))).....))........ ( -31.80)
>DroEre_CAF1 45348 81 + 1
UCGCCCAAGGGUUGCAGCAUCCUUGAGGGUUGGCCCCGGCAACAGGCCGUGCCACCCUCCCGGCCACC---------------UCCGCCCACCAAC
........((((.(.((...((..((((((.(((..((((.....)))).)))))))))..))....)---------------)).))))...... ( -30.80)
>DroYak_CAF1 42153 91 + 1
UCGCCCAAGGGUUGCAGCAUCCUUGAGGGUUGGCCCGGGCAACAGGCCGUGCCACCCUCCCGGCCAUCCUCCCGGUC-----AUCCGCCCACCAAC
........((((............((((((.(((.(((.(....).))).)))))))))..((((........))))-----....))))...... ( -33.80)
>consensus
UCGCCCAAGGGUUGCAGCAUCCUUGAGGGUUGGCCCGGGCAACAGGCCGUGCCACCCUCCCGGCCAUCCUCCCAGCC_____AUCCGCCCACCAAC
..(((.((((((......))))))((((((.(((.(((.(....).))).)))))))))..)))................................ (-27.65 = -28.15 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:59 2006