| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 17,876,548 – 17,876,657 |
| Length | 109 |
| Max. P | 0.793981 |
| Location | 17,876,548 – 17,876,657 |
|---|---|
| Length | 109 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 80.45 |
| Mean single sequence MFE | -40.56 |
| Consensus MFE | -23.72 |
| Energy contribution | -27.28 |
| Covariance contribution | 3.56 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.60 |
| SVM RNA-class probability | 0.793981 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17876548 109 + 20766785 GCUCC---------GGUGGCACCAACUUGGAGCUCCGACUUGGAGCUGAAUGGGAUGGCACUAGCU--UCUGCCUUUUGCUUUCGUUCGGCUCGGUCGUGCAUCAUUAACCCACUGGCGA .(.((---------(((((..((.....)).((..(((((..((((((((((((..((((..(((.--...).))..))))))))))))))))))))).)).........))))))).). ( -42.10) >DroSec_CAF1 41393 109 + 1 GCUCC---------GGUGGCUCCAACUUGGAGCUCCGACUUGGAGCUGAAUGGGAUGGCACUAGCU--UCUGCCUUUUGCUUUCGUUCGGCUCGGUCGUGCAUCAUUAACCCACUGGCGA .(.((---------(((((((((.....)))))..(((((..((((((((((((..((((..(((.--...).))..))))))))))))))))))))).............)))))).). ( -44.50) >DroSim_CAF1 41854 109 + 1 GCUCC---------GGUGGCUCCAACUUGGAGCUUCGGCUUGGAGCUGAAUGGGAUGGCACUAGCU--UCUGCCUUUUGCUUUCGUUCGGCUCGGUCGUGCAUCAUUAACCCACUGGCGA .(.((---------(((((((((.....)))))..(((((..((((((((((((..((((..(((.--...).))..))))))))))))))))))))).............)))))).). ( -43.70) >DroEre_CAF1 43792 101 + 1 GCUCCAGCUGUUCCAGCUGCUCCGG----UGGCUCCAACUUGGA-------------GCACUGGCU--UCUGCCUUUUGCUUUCGUUCGUCUCGGUCGUGCAUCAUUAACCCACUGGCGA ....((((((...))))))(.((((----(((((((.....)))-------------))...(((.--...)))...(((...((..((...))..)).))).........)))))).). ( -33.30) >DroYak_CAF1 40561 115 + 1 GCUCCGCUUGCUCCGGUGGCUCCGA----UGGCUCCAACUUGGAGCUGAAUCCAA-AGCACUGGCAUCUCUGCCUUUUGCUUUCGUUCGGCUCGUUCGUGCAUCAUUAACCCACUGGCGA ..........(.(((((((....((----((((.(.(((...(((((((((..((-((((..((((....))))...)))))).)))))))))))).).))..))))...))))))).). ( -39.20) >consensus GCUCC_________GGUGGCUCCAACUUGGAGCUCCGACUUGGAGCUGAAUGGGAUGGCACUAGCU__UCUGCCUUUUGCUUUCGUUCGGCUCGGUCGUGCAUCAUUAACCCACUGGCGA (((...........(((((((((.....)))))..(((((..(((((((((((...((((..(((......).))..)))).)))))))))))))))).............))))))).. (-23.72 = -27.28 + 3.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:58 2006