Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,913,745 – 2,913,862 |
Length | 117 |
Max. P | 0.914803 |
Location | 2,913,745 – 2,913,862 |
---|---|
Length | 117 |
Sequences | 4 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 91.88 |
Mean single sequence MFE | -35.85 |
Consensus MFE | -32.10 |
Energy contribution | -32.10 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.14 |
Mean z-score | -1.88 |
Structure conservation index | 0.90 |
SVM decision value | 1.10 |
SVM RNA-class probability | 0.914803 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2913745 117 + 20766785 CUCGAUUCUUUAGCCAUUCUCUACCUGUUUCAAUGGGAAAUAGGAGCGGUGCUGAAUAAAAUCAACGAACUGAAGUCCUGGCUCGACCAGAACGUAAAAGGGCGUCAGGACUCGGAC ...((((.((((((...((.((.((((((((.....)))))))))).)).))))))...))))......((((.((((((((....((...........))..)))))))))))).. ( -36.50) >DroSec_CAF1 3004 117 + 1 CUUGAUUAUCUAGCCAUUCUCUACCUGUUUCAAUGGGAAAUAGGAGCGGUGCAGAAUAAAAUCAACGAACUGAAGUCCUGGCUCGACCAGAACGUUAAAGGGCGCCAGGACUCGGAC .((((((.(((.((...((.((.((((((((.....)))))))))).)).)))))....))))))....((((.((((((((....((...........))..)))))))))))).. ( -37.20) >DroSim_CAF1 3064 117 + 1 CUCGAUUCUCUAGCCAUUCUCUACCUGUUUCAAUGGGAAAUAGGAGCGGUGCAGAAUAAAAUCAACGAACUGAAGUCCUGGCUCGACCAGAACGUAAAAGGGCGCCAGGACUCGGAC ...((((.(((.((...((.((.((((((((.....)))))))))).)).)))))....))))......((((.((((((((....((...........))..)))))))))))).. ( -36.10) >DroYak_CAF1 3005 117 + 1 CUUUAUUCUUUAGCCAUUUUCUACCUAUUUCAAUGGGAAAUAGGAGCAGUGCUGAAUGAAAUAAACGAGCUGAAGUCCUGGCUGGAUCAGAACAUUAAAGGGCGACAGGACUCGGCC .....(((((((((.(((..((.((((((((.....)))))))))).))))))))).)))........(((((.(((((((((.(((......)))....)))..))))))))))). ( -33.60) >consensus CUCGAUUCUCUAGCCAUUCUCUACCUGUUUCAAUGGGAAAUAGGAGCGGUGCAGAAUAAAAUCAACGAACUGAAGUCCUGGCUCGACCAGAACGUAAAAGGGCGCCAGGACUCGGAC ...((((.((((((...((.((.((((((((.....)))))))))).)).))))))...))))......((((.((((((((....((...........))..)))))))))))).. (-32.10 = -32.10 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:42 2006