| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 17,872,407 – 17,872,509 |
| Length | 102 |
| Max. P | 0.749824 |
| Location | 17,872,407 – 17,872,509 |
|---|---|
| Length | 102 |
| Sequences | 5 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 96.00 |
| Mean single sequence MFE | -33.55 |
| Consensus MFE | -30.74 |
| Energy contribution | -31.06 |
| Covariance contribution | 0.32 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.26 |
| Structure conservation index | 0.92 |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.749824 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17872407 102 + 20766785 GCGUUCCUGGCAUUUUGUGGCUGCUGCUGUGGCUGCAUCUGCAUUUGCCACCCACUUCCCCGCGCCUGGAUGUGUGCUUAAAUUCCUCACCAGGAGCAGU-UG ..((((((((......(((((....)).((((((((....)))...))))).)))......(((((.....).))))............))))))))...-.. ( -32.60) >DroSec_CAF1 37357 102 + 1 GCGUUCCUGGCAUUUUGUGGCUGCUGCUGUGGCUGCAUCUGCAUUUGCCGCCCACUUCUCCGCCCCUGGUUGUGUGCUUAAAUUCCUCACCAGGAGCAGU-UG ..((((((((((...((..(.(((.((....)).))).)..))..))))((.(((....(((....)))..))).))..............))))))...-.. ( -33.50) >DroSim_CAF1 37758 102 + 1 GCGUUCCUGGCAUUUUGUGGCUGCUGCUGUGGCUGCAUCUGCAUUUGCCGCCCACUUCUCCGCCCCUGGAUGUGUGCUUAAAUUCCUCACCAGGAGCAGU-UG ..((((((((((...((..(.(((.((....)).))).)..))..))))((.(((...((((....)))).))).))..............))))))...-.. ( -34.80) >DroEre_CAF1 39769 102 + 1 GCGUUCCUGGCAUUUUGUGGCUGCUGCUGCGGCUGCAUCUGCAUUUGCCGCCCACUUCUCCGCCCCCUGAUGUGUGCUUAAAUUCCUCACCAGGAGCAGU-UG ..((((((((((...((..(((((....)))))..))..))).......((.(((.((..........)).))).)).............)))))))...-.. ( -34.90) >DroYak_CAF1 36462 103 + 1 GCGUUCCUGGCAUUUUGUGGCUGCUGCUGUGGCUGCAUCUGCAUUUGCCACCCACUUCGCCGCCCCCUGAUGUGUGCUUAAAUUCCUCACCAGGAGCAGUUUG ..((((((((......(((((.......((((((((....)))...))))).......)))))....(((.(.((......)).).)))))))))))...... ( -31.94) >consensus GCGUUCCUGGCAUUUUGUGGCUGCUGCUGUGGCUGCAUCUGCAUUUGCCGCCCACUUCUCCGCCCCUGGAUGUGUGCUUAAAUUCCUCACCAGGAGCAGU_UG ..((((((((((...((..(((((....)))))..))..))).......((.(((.(((........))).))).)).............)))))))...... (-30.74 = -31.06 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:48 2006