Locus 5607

Sequence ID 2R_DroMel_CAF1
Location 17,871,897 – 17,872,009
Length 112
Max. P 0.975302
window8981

overview

Window 1

Location 17,871,897 – 17,872,009
Length 112
Sequences 5
Columns 112
Reading direction reverse
Mean pairwise identity 93.01
Mean single sequence MFE -22.88
Consensus MFE -19.40
Energy contribution -19.52
Covariance contribution 0.12
Combinations/Pair 1.08
Mean z-score -1.91
Structure conservation index 0.85
SVM decision value 1.75
SVM RNA-class probability 0.975302
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17871897 112 - 20766785
GAGGACACACCUCGAGUGGGCUGCAUAUUUUUCCUGCUUCCGCUCGUAUGUUUCACAUAUUUGCCUGCUUCCUUCCUUUCUUUCUGCCUCCUUUAGGAUUAUAUACACCUAC
((((.....))))..(((((.((.((((...(((((.....((..(((((.....)))))..))..((.................))......)))))..)))).))))))) ( -23.43)
>DroSec_CAF1 36868 112 - 1
GAGGACACACCUCGAUUGGGCUGCAUAUUUUCCCUGCUUCCGCUCGUAUGUUUCACAUAUUUGCCUGCUUCCUUCCUUUCUUUCUGCCUCCUUUAGGAUUAUAUACACCUUC
((((.....))))....(((.((.((((..(((........((..(((((.....)))))..))..((.................))........)))..)))).))))).. ( -19.03)
>DroSim_CAF1 37269 112 - 1
GAGGACACACCUCGAGUGGGCUGCAUAUUUUCCCUGCUUCCGCUCGUAUGUUUCACAUAUUUGCCUGCUUCCUUCCUUUCUUUCUGCCUCCUUUAGGAUUAUAUACACCUUC
((((.....))))(((((((..(((.........))).)))))))((((((...............((.................)).(((....)))..))))))...... ( -22.83)
>DroEre_CAF1 39266 108 - 1
GAGGACACACCUCGUGUGGGCUGCAUAUUUUCCCUGCUUCCGUUCGUAUGUUUCGCAUAUUUGCCUGCUUCCUUCCCU----UCUGCCUCCUAUAGGAUUAUAUGCACCUUC
((((.....))))....(((.(((((((..(((........((..(((((.....)))))..))..((..........----...))........)))..)))))))))).. ( -24.62)
>DroYak_CAF1 35954 108 - 1
GAGGACACACCUCGAGUGGGCUGCAUAUUUUCCCUGCUUCCGCUCGUAUGUUUCACAUAUUUGCCUGCUUGCUUCCCU----UCUACGUCCUUUCGGAUUAUAUACACCUUC
((((.....))))(((((((..(((.........))).)))))))((((((...........((......))......----.....((((....)))).))))))...... ( -24.50)
>consensus
GAGGACACACCUCGAGUGGGCUGCAUAUUUUCCCUGCUUCCGCUCGUAUGUUUCACAUAUUUGCCUGCUUCCUUCCUUUCUUUCUGCCUCCUUUAGGAUUAUAUACACCUUC
((((.....))))(((((((..(((.........))).)))))))((((((....((....)).........................(((....)))..))))))...... (-19.40 = -19.52 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:47 2006