Locus 5606

Sequence ID 2R_DroMel_CAF1
Location 17,871,399 – 17,871,506
Length 107
Max. P 0.651665
window8980

overview

Window 0

Location 17,871,399 – 17,871,506
Length 107
Sequences 4
Columns 117
Reading direction reverse
Mean pairwise identity 86.16
Mean single sequence MFE -18.75
Consensus MFE -14.95
Energy contribution -16.08
Covariance contribution 1.13
Combinations/Pair 1.08
Mean z-score -1.57
Structure conservation index 0.80
SVM decision value 0.25
SVM RNA-class probability 0.651665
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17871399 107 - 20766785
----------UUUUUUACUUAAUUAAAUCAAUUUCAUACUUCCCUCUUACUCACUGGAAUGUGAAAAAAAAUUUGUCAGCAUUUAAUGUUGUUUACUUGCGAAUUUGAUUAGUUUUU
----------........(((((((((((..(((((((.((((............)))))))))))............(((..(((......)))..)))).))))))))))..... ( -16.50)
>DroSec_CAF1 36217 107 - 1
----------UUUUUUACUCAAUUUAGUCAAUUUCGUACUUCCCUCUUACUCACUGGAAUGUGACAAAAAGUUAGCCAGCAUUAAAUGUUGUUUACUUGCGAAUUUGAUUAGUUUUU
----------.............((((((((.(((((.............((((......))))....((((.(((.(((((...)))))))).))))))))).))))))))..... ( -21.20)
>DroSim_CAF1 36596 107 - 1
----------UUUUUUACUCAAUUUAGUCAAUUUCGUACUUCCCUCUUACUCACUGGAAUGUGACAAAAAGUUAGCCAGCAUUAAAUGUUGUUUACUUGCGAAUUUGAUUAGUUUUU
----------.............((((((((.(((((.............((((......))))....((((.(((.(((((...)))))))).))))))))).))))))))..... ( -21.20)
>DroYak_CAF1 35229 117 - 1
UUUGAUUAUUUUUCUAACCCAAUUAAGUCACUUUAAUACUUCCCUCUUACUCACUUGACUGUGAAAAAAAGUUUGCCAGCAUUCCAUGCUGUUUACAUGCGAAUUUGAUUAGUUUUU
.........................((((.....................((((......))))....((((((((((((((...)))))).......))))))))))))....... ( -16.11)
>consensus
__________UUUUUUACUCAAUUAAGUCAAUUUCAUACUUCCCUCUUACUCACUGGAAUGUGAAAAAAAGUUAGCCAGCAUUAAAUGUUGUUUACUUGCGAAUUUGAUUAGUUUUU
.......................((((((((.((((((............((((......))))............((((((...))))))......)))))).))))))))..... (-14.95 = -16.08 +   1.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:46 2006