Locus 5605

Sequence ID 2R_DroMel_CAF1
Location 17,871,193 – 17,871,288
Length 95
Max. P 0.563592
window8979

overview

Window 9

Location 17,871,193 – 17,871,288
Length 95
Sequences 5
Columns 95
Reading direction forward
Mean pairwise identity 99.16
Mean single sequence MFE -22.66
Consensus MFE -22.04
Energy contribution -22.24
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.22
Structure conservation index 0.97
SVM decision value 0.06
SVM RNA-class probability 0.563592
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17871193 95 + 20766785
CGAACGCAACUGCAAGUUGACAAAUUUAUUAUCCAUGGCGAUGGCAGCCGCCAGAACGCGACUCGAGUGCAAAUGAGCACAAGGAACACCACAAA
.....(((((.....)))).)..........(((...(((.((((....))))...))).......((((......))))..))).......... ( -22.10)
>DroSec_CAF1 36011 95 + 1
CGAAUGCAACUGCAAGUUGACAAAUUUAUUAUCCAUGGCGAUGGCAGCCGCCAGAACGCGACUCGAGUGCAAAUGAGCACAAGGAACACCACAAA
....((((((.....)))).)).........(((...(((.((((....))))...))).......((((......))))..))).......... ( -22.80)
>DroSim_CAF1 36390 95 + 1
CGAAUGCAACUGCAAGUUGACAAAUUUAUUAUCCAUGGCGAUGGCAGCCGCCAGAACGCGACUCGAGUGCAAAUGAGCACAAGGAACACCACAAA
....((((((.....)))).)).........(((...(((.((((....))))...))).......((((......))))..))).......... ( -22.80)
>DroEre_CAF1 38402 95 + 1
CGAAUGCAACUGCAAGUUGACAAAUUUAUUAUCCAUGGCGAUGGCAGCCGCCAGAACGCGACUCGAGUGCAAAUGAGCACAAGGAACACCACAAA
....((((((.....)))).)).........(((...(((.((((....))))...))).......((((......))))..))).......... ( -22.80)
>DroYak_CAF1 35024 95 + 1
CGAAUGCAACUGCAAGUUGACAAAUUUAUUAUCCAUGGCGAUGGCAGACGCCAGAACGCGACUCGAGUGCAAAUGAGCACAAGGAACACCACAAA
....((((((.....)))).)).........(((...(((.((((....))))...))).......((((......))))..))).......... ( -22.80)
>consensus
CGAAUGCAACUGCAAGUUGACAAAUUUAUUAUCCAUGGCGAUGGCAGCCGCCAGAACGCGACUCGAGUGCAAAUGAGCACAAGGAACACCACAAA
.((((.((((.....))))....))))....(((...(((.((((....))))...))).......((((......))))..))).......... (-22.04 = -22.24 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:45 2006