| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 17,870,665 – 17,870,818 |
| Length | 153 |
| Max. P | 0.651518 |
| Location | 17,870,665 – 17,870,778 |
|---|---|
| Length | 113 |
| Sequences | 5 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 93.53 |
| Mean single sequence MFE | -21.52 |
| Consensus MFE | -17.48 |
| Energy contribution | -18.00 |
| Covariance contribution | 0.52 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.541377 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17870665 113 + 20766785 AUUGACACUUGAACCUUUUGAGUCAAUAUUUAGUUUCUCAAUGAGCUGCACUUGGAAAUUACCUAAUUGAUAUUUAAUACGCACGCCCAUUGAUAUAAUUAAAAGCUUGCCUA ((((((.(...........).)))))).(((((((..((((((.(((((..(((((.((((......)))).)))))...))).)).))))))...))))))).......... ( -20.20) >DroSec_CAF1 35494 110 + 1 AUUGACACUUGAACCU-UCGAGUCAAUAUUUAGUUUCUCAAUGAGCUGCACUUGGAAAUUACCUAAUUGACAUUUG--ACGCACGCCCAUUGAUAUAAUUAAAAUCUUGCCUA ((((((..((((....-)))))))))).(((((((..((((((.(((((...((..((((....))))..))....--..))).)).))))))...))))))).......... ( -21.40) >DroSim_CAF1 35857 112 + 1 AUUGACACUUGAACCU-UCGAGUCAAUAUUUAGUUUCUCAAUGAGCUGCACUUGGAAAUUACCUAAUUGACAUUUAAUACGCACGCCCAUUGAUAUAAUUAAAAGCUUGCCUA ((((((..((((....-)))))))))).(((((((..((((((.(((((....((......))..(((((...)))))..))).)).))))))...))))))).......... ( -20.70) >DroEre_CAF1 37882 112 + 1 AUCGACACUCGAACCUUGCGAGUCAAUAUUUAGUUACUCAAUGAGCUGCACUUGGAAAUUACCUAAUUGAUAUUUAAUACGCACGCCCAUUGAAAUAAUUAA-AGCAUGGCUA .(((.....)))........(((((...((((((((.((((((.(((((..(((((.((((......)))).)))))...))).)).))))))..)))))))-)...))))). ( -24.60) >DroYak_CAF1 34468 113 + 1 AUUGACACUUGAACCUUGCGAGUCAAUAUUUAGUUACUCAAUGAGCUGCACUUGGAAAUUACCUAAUUGAUAUUUAAUACGCACGCCCAUUGAUAUAAUUAAAAGCCUGGCUA ....................(((((...((((((((.((((((.(((((..(((((.((((......)))).)))))...))).)).))))))..))))))))....))))). ( -20.70) >consensus AUUGACACUUGAACCUUUCGAGUCAAUAUUUAGUUUCUCAAUGAGCUGCACUUGGAAAUUACCUAAUUGAUAUUUAAUACGCACGCCCAUUGAUAUAAUUAAAAGCUUGCCUA ((((((..(((.......))))))))).(((((((..((((((.(((((..(((((.((((......)))).)))))...))).)).))))))...))))))).......... (-17.48 = -18.00 + 0.52)
| Location | 17,870,698 – 17,870,818 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 94.25 |
| Mean single sequence MFE | -28.60 |
| Consensus MFE | -24.08 |
| Energy contribution | -24.44 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.84 |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.651518 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17870698 120 - 20766785 CGAAUUUUCAGCAGACUUACGUCACUUAAUUGAUGGCCAGUAGGCAAGCUUUUAAUUAUAUCAAUGGGCGUGCGUAUUAAAUAUCAAUUAGGUAAUUUCCAAGUGCAGCUCAUUGAGAAA .....(((((((.......(((((......)))))(((....)))..)))..........((((((((((..(.....((.((((.....)))).)).....)..).))))))))))))) ( -29.70) >DroSec_CAF1 35526 118 - 1 CGAAUUUUCAACAGACUUACGUCACUUAAUUGAUGGCCAGUAGGCAAGAUUUUAAUUAUAUCAAUGGGCGUGCGU--CAAAUGUCAAUUAGGUAAUUUCCAAGUGCAGCUCAUUGAGAAA .....((((......(((.(((((......)))))(((....))))))............(((((((((.((((.--(....).).....((......))....)))))))))))))))) ( -27.20) >DroSim_CAF1 35889 120 - 1 CGAAUUUUCAGCACACUUACGUCACUUAAUUGAUGGCCAGUAGGCAAGCUUUUAAUUAUAUCAAUGGGCGUGCGUAUUAAAUGUCAAUUAGGUAAUUUCCAAGUGCAGCUCAUUGAGAAA .....(((((((.......(((((......)))))(((....)))..)))..........(((((((((.((((.....(((....))).((......))...))))))))))))))))) ( -28.80) >DroEre_CAF1 37915 119 - 1 CGAAUUUUCAGCAGACUUACGUCACUUCAUUGAUGGCCGGUAGCCAUGCU-UUAAUUAUUUCAAUGGGCGUGCGUAUUAAAUAUCAAUUAGGUAAUUUCCAAGUGCAGCUCAUUGAGUAA ..((((...(((.(((....))).........(((((.....))))))))-..))))..(((((((((((..(.....((.((((.....)))).)).....)..).))))))))))... ( -29.20) >DroYak_CAF1 34501 120 - 1 CGAAUUUUCAGCAGACUUACGUCACUUAAAUGAUGGCCAGUAGCCAGGCUUUUAAUUAUAUCAAUGGGCGUGCGUAUUAAAUAUCAAUUAGGUAAUUUCCAAGUGCAGCUCAUUGAGUAA ..((((...(((.(((....)))..........((((.....)))).)))...))))...((((((((((..(.....((.((((.....)))).)).....)..).))))))))).... ( -28.10) >consensus CGAAUUUUCAGCAGACUUACGUCACUUAAUUGAUGGCCAGUAGGCAAGCUUUUAAUUAUAUCAAUGGGCGUGCGUAUUAAAUAUCAAUUAGGUAAUUUCCAAGUGCAGCUCAUUGAGAAA ..((((...(((.......(((((......)))))(((....)))..)))...))))...((((((((((..(.....((.((((.....)))).)).....)..).))))))))).... (-24.08 = -24.44 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:44 2006