Locus 5602

Sequence ID 2R_DroMel_CAF1
Location 17,869,881 – 17,869,995
Length 114
Max. P 0.998493
window8974

overview

Window 4

Location 17,869,881 – 17,869,995
Length 114
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 86.59
Mean single sequence MFE -22.73
Consensus MFE -19.60
Energy contribution -19.60
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -2.82
Structure conservation index 0.86
SVM decision value 3.12
SVM RNA-class probability 0.998493
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17869881 114 - 20766785
AAAUUCUAUGGAACGAAUUAGAGUGCAGGCGGCAUUCCCAUUUCCAUUCC------CAAUCCCGAAUACCGAAUCCCAUUCCCACUCGCCUCGCACUAAUUCACUUUGCAGUUUCAUCUC
.......((((((((((((((.(((.((((((.((((.............------.......)))).))((((...))))......))))))).)))))))........)))))))... ( -22.75)
>DroSec_CAF1 34735 94 - 1
AAAUUCUAUGGAACGAAUUAGAGUGCAGGCGGCAUUUC------CAUUCC------CAA--------------UCCCAAUUCCACUCGCCUCGCACUAAUUCACUUUGCAGUUUCAUCUC
.......((((((((((((((.(((.((((((......------......------...--------------............))))))))).)))))))........)))))))... ( -20.33)
>DroSim_CAF1 35092 94 - 1
AAAUUCUAUGGAACGAAUUAGAGUGCAGGCGGCAUUUC------CAUUCC------CAA--------------UCCCAUUCCCACUCGCCUCGCACUAAUUCACUUUGCAGUUUCAUCUC
.......((((((((((((((.(((.((((((......------......------...--------------............))))))))).)))))))........)))))))... ( -20.33)
>DroEre_CAF1 37197 100 - 1
AAAUUCUAUGGAACGAAUUAGAGUGCAGGCGGCAUUUC------CAUUCCCAUUCCCAU--------------UCCCGUUGCCACUCGCCUCGCACUAAUUCACUUUGCAGUUUCAUCUC
.......((((((((((((((.(((.((((((((....------...............--------------......))))....))))))).)))))))........)))))))... ( -22.61)
>DroYak_CAF1 33683 94 - 1
AAAUUCUAUGGAACGAAUUAGUGUGCAGGCGGCAUUUC------CACUCC------CAU--------------UCCCGUUGCCACUCGCCUCGCACUAAUUCACUUUGCAGUUUCAUCUC
.......((((((((((((((((((.((((((((....------......------...--------------......))))....)))))))))))))))........)))))))... ( -27.61)
>consensus
AAAUUCUAUGGAACGAAUUAGAGUGCAGGCGGCAUUUC______CAUUCC______CAA______________UCCCAUUCCCACUCGCCUCGCACUAAUUCACUUUGCAGUUUCAUCUC
.......((((((((((((((.(((.((((((.....................................................))))))))).)))))))........)))))))... (-19.60 = -19.60 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:40 2006