Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 17,869,771 – 17,869,879 |
Length | 108 |
Max. P | 0.984941 |
Location | 17,869,771 – 17,869,879 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 98.24 |
Mean single sequence MFE | -34.18 |
Consensus MFE | -32.38 |
Energy contribution | -32.62 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.04 |
Mean z-score | -1.79 |
Structure conservation index | 0.95 |
SVM decision value | 1.99 |
SVM RNA-class probability | 0.984941 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17869771 108 + 20766785 UCGCCUGCACCUGACAUUGCGCAGAUCCGUGUAAUCCGCCACCGAAAAAGGACGCGGAAAGUGCAGGAAAACUAUUUUCCACGGAUGGCAGAGAUGGCAUAAGUAACU ..(((.(((........)))((..(((((((((.(((((..((......))..)))))...))).(((((.....))))))))))).))......))).......... ( -33.90) >DroSec_CAF1 34625 108 + 1 UCGCCUGCACCUGACUUUGCACAGAUCCGUGUAAUCCGCCACCGAAAAAGGACGCGGAAAGUGCAGGAAAACUAUUUUCCACGGAUGGCAGAGAUGGCAUAAGUAACU ..(((..(....).((((((....(((((((((.(((((..((......))..)))))...))).(((((.....))))))))))).))))))..))).......... ( -34.00) >DroSim_CAF1 34982 108 + 1 UCGCCUGCACUUGACUUCGCGCAGAUCCGUGUAAUCCGCCACCGAAAAAGGACGCGGAAAGUGCAGGAAAACUAUUUUCCACGGAUGGCAGAGAUGGCAUAAGUAACU ...(((((((((......((((......))))..(((((..((......))..)))))))))))))).............((..(((.((....)).)))..)).... ( -34.00) >DroEre_CAF1 37087 108 + 1 UCGCCUGCACCUGACUUUGCGCAGAUCCGUGUAAUCCGCCACCGAAAAAGGACGCGGAAAGUGCAGGAAAACUAUUUUCCACGGAUGGCAGAGAUGGCAUAAGUAACU ..(((.(((........)))((..(((((((((.(((((..((......))..)))))...))).(((((.....))))))))))).))......))).......... ( -33.90) >DroYak_CAF1 33573 108 + 1 UCGCCUGCACCUGACUUGGCGCAGAUCCGUGUAAUCCGCCACCGAAAAAGGACGCGGAAAGUGCAGGAAAACUAUUUUCCACGGAUGGCAGAGAUGGCAUAAGUAACU ..((((((.((......)).))).(((((((((.(((((..((......))..)))))...))).(((((.....))))))))))))))................... ( -35.10) >consensus UCGCCUGCACCUGACUUUGCGCAGAUCCGUGUAAUCCGCCACCGAAAAAGGACGCGGAAAGUGCAGGAAAACUAUUUUCCACGGAUGGCAGAGAUGGCAUAAGUAACU ...(((((((......((((((......))))))(((((..((......))..)))))..))))))).............((..(((.((....)).)))..)).... (-32.38 = -32.62 + 0.24)
Location | 17,869,771 – 17,869,879 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 98.24 |
Mean single sequence MFE | -34.40 |
Consensus MFE | -33.40 |
Energy contribution | -33.24 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.04 |
Mean z-score | -1.37 |
Structure conservation index | 0.97 |
SVM decision value | 0.85 |
SVM RNA-class probability | 0.866424 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17869771 108 - 20766785 AGUUACUUAUGCCAUCUCUGCCAUCCGUGGAAAAUAGUUUUCCUGCACUUUCCGCGUCCUUUUUCGGUGGCGGAUUACACGGAUCUGCGCAAUGUCAGGUGCAGGCGA .........((((...(((((((((((((((((...((......))..)))))))).........)))))))))...........(((((........))))))))). ( -33.30) >DroSec_CAF1 34625 108 - 1 AGUUACUUAUGCCAUCUCUGCCAUCCGUGGAAAAUAGUUUUCCUGCACUUUCCGCGUCCUUUUUCGGUGGCGGAUUACACGGAUCUGUGCAAAGUCAGGUGCAGGCGA .........((((...(((((((((((((((((...((......))..)))))))).........)))))))))......(.(((((........))))).).)))). ( -33.70) >DroSim_CAF1 34982 108 - 1 AGUUACUUAUGCCAUCUCUGCCAUCCGUGGAAAAUAGUUUUCCUGCACUUUCCGCGUCCUUUUUCGGUGGCGGAUUACACGGAUCUGCGCGAAGUCAAGUGCAGGCGA .........((((...(((((((((((((((((...((......))..)))))))).........)))))))))...........(((((........))))))))). ( -34.10) >DroEre_CAF1 37087 108 - 1 AGUUACUUAUGCCAUCUCUGCCAUCCGUGGAAAAUAGUUUUCCUGCACUUUCCGCGUCCUUUUUCGGUGGCGGAUUACACGGAUCUGCGCAAAGUCAGGUGCAGGCGA .........((((...(((((((((((((((((...((......))..)))))))).........)))))))))......(.((((((.....).))))).).)))). ( -34.00) >DroYak_CAF1 33573 108 - 1 AGUUACUUAUGCCAUCUCUGCCAUCCGUGGAAAAUAGUUUUCCUGCACUUUCCGCGUCCUUUUUCGGUGGCGGAUUACACGGAUCUGCGCCAAGUCAGGUGCAGGCGA .........((((...(((((((((((((((((...((......))..)))))))).........)))))))))...........((((((......)))))))))). ( -36.90) >consensus AGUUACUUAUGCCAUCUCUGCCAUCCGUGGAAAAUAGUUUUCCUGCACUUUCCGCGUCCUUUUUCGGUGGCGGAUUACACGGAUCUGCGCAAAGUCAGGUGCAGGCGA .........((((...(((((((((((((((((...((......))..)))))))).........)))))))))...........(((((........))))))))). (-33.40 = -33.24 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:39 2006