Locus 560

Sequence ID 2R_DroMel_CAF1
Location 2,912,486 – 2,912,582
Length 96
Max. P 0.577296
window1033

overview

Window 3

Location 2,912,486 – 2,912,582
Length 96
Sequences 5
Columns 116
Reading direction reverse
Mean pairwise identity 76.57
Mean single sequence MFE -26.88
Consensus MFE -13.36
Energy contribution -13.92
Covariance contribution 0.56
Combinations/Pair 1.25
Mean z-score -1.80
Structure conservation index 0.50
SVM decision value 0.09
SVM RNA-class probability 0.577296
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2912486 96 - 20766785
GAACUAAAUU-----AAUUCCGCCAA------------GAUGGGUGCAUCUUGGAUU-CACGAAAAAGGCGCGAAUAAUCCAUUGGUACCAGAUCACAUUUUAAUUUAGGCCAU--
(..(((((((-----((.....((((------------((((....))))))))...-.........((..(.(((.....))).)..))..........)))))))))..)..-- ( -23.50)
>DroSec_CAF1 1757 113 - 1
GAACUGAAUUACCAUAAUUCCGUCCAAUGGCAGAAACAUAUGGGCGCAUCUUGGAUU-CGCGAAAAAGCCGCGAAUAAUCCAUUGGUACCAGAUCACAUUUCAAUUUAGGCCAU--
(..(((((((((((......(((((((((.......))).)))))).....((((((-((((.......)))))...))))).))))....((.......)))))))))..)..-- ( -29.40)
>DroSim_CAF1 1798 107 - 1
GAACUGAAUU-----AAUUCCGUCCAAUGGCAGA-ACAUAUGUACGCAGCUUGGAUU-CGCGAAAAAGCCGCGAAUAAUCCAUUGGUACCAGAUCACAUUUCAAUUUAGUCUAU--
..((((((((-----......(((((((((....-.((..((....))...)).(((-((((.......)))))))...))))))).))..((.......))))))))))....-- ( -24.90)
>DroEre_CAF1 2190 111 - 1
GGACUGAAAU-----AUUUCCGUCCAGCGACAGAAGCAAAUGGACGCAGUCUAGGUUUCGCGAAAAAGCCGCGAGUAAUCCAUUGGUGCCAGAUUGCAUAUCAAUUUGUGUGACUU
((((((....-----.....((((((((.......))...)))))))))))).((.((((((.......))))))....))...((((((((((((.....))))))).)).))). ( -30.40)
>DroYak_CAF1 1690 105 - 1
GGACUGAAUU-----AUUUCAGUCCAAUGACAGAAACAAAUGGACGCAGUCUUGAUUU-GCGAAAAAGCCGCAAAUAAUCCAUUGGUACCAGAUCACAUUUAAAUUUAGGU-----
((((((((..-----..))))))))...............(((((.((((....((((-(((.......))))))).....)))))).)))....................----- ( -26.20)
>consensus
GAACUGAAUU_____AAUUCCGUCCAAUGACAGAAACAAAUGGACGCAGCUUGGAUU_CGCGAAAAAGCCGCGAAUAAUCCAUUGGUACCAGAUCACAUUUCAAUUUAGGCCAU__
...(((((((...........(((((..............)))))((....((((((.((((.......))))...))))))...))...............)))))))....... (-13.36 = -13.92 +   0.56) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:41 2006