Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 17,867,402 – 17,867,497 |
Length | 95 |
Max. P | 0.799244 |
Location | 17,867,402 – 17,867,497 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 90.79 |
Mean single sequence MFE | -25.92 |
Consensus MFE | -19.84 |
Energy contribution | -20.68 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.04 |
Mean z-score | -1.88 |
Structure conservation index | 0.77 |
SVM decision value | 0.61 |
SVM RNA-class probability | 0.799244 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17867402 95 + 20766785 CGAAAGCCACAUGUGUGGUGUGACCAUGCACUCCUUACUGUGGCAUCCUGCGACACGC--CAUCCCUUUUAUAUGGCGGCCAUAACUUUUCACCGAA .((((((((((.(((.((.(((......))).)).)))))))))...........(((--(((.........)))))).........))))...... ( -29.00) >DroSec_CAF1 32652 95 + 1 CGAAAGCCACAUGUGUGGUGUGACCAUCCACUCCUUACUGUGGCAUCCAGCGACACAC--CAUCCUUUUUAUAUGGUGGCCAUAACUUUUCACCAUA .((((((((((.(((.((.(((......))).)).)))))))))...........(((--(((.........)))))).........))))...... ( -27.70) >DroSim_CAF1 33003 95 + 1 CGAAAGCCACAUGUGUGGUGUGACCAUCCACUCCUUACUGUGGCAUCCAGCGACACGC--CAUCCUUUUUAUAUGGCGGCCAUAACUUUUCACCAUA .((((((((((.(((.((.(((......))).)).)))))))))...........(((--(((.........)))))).........))))...... ( -29.20) >DroEre_CAF1 35104 93 + 1 CGAAAGCCACAUGUGUGGUGUGACCAUGCACUCCUCACU--GGCAUCCAGCGACAUGG--CGUCCUUUUUAUAUGGCGGCCAUAACUUUUCAGCAUG ((...(((((....))))).))..(((((.....((.((--((...)))).)).((((--(..((.........))..))))).........))))) ( -25.70) >DroYak_CAF1 31409 95 + 1 CGAAAGCCACAUGUGUGGUGUGACCAUGCACUCCUUACU--GCCAUCCUGCGACAUGCCACAUCCUUUUUAUAUGGCGGCCAUAACUUUUCAGCGAA .(((((((((....)))))(((.((..(((........)--)).............((((.((.......)).)))))).)))....))))...... ( -18.00) >consensus CGAAAGCCACAUGUGUGGUGUGACCAUGCACUCCUUACUGUGGCAUCCAGCGACACGC__CAUCCUUUUUAUAUGGCGGCCAUAACUUUUCACCAUA .((((((((((.(((.((.(((......))).)).)))))))))...........................(((((...)))))...))))...... (-19.84 = -20.68 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:32 2006