Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 17,863,822 – 17,863,916 |
Length | 94 |
Max. P | 0.819519 |
Location | 17,863,822 – 17,863,916 |
---|---|
Length | 94 |
Sequences | 4 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 88.07 |
Mean single sequence MFE | -35.52 |
Consensus MFE | -26.56 |
Energy contribution | -25.56 |
Covariance contribution | -1.00 |
Combinations/Pair | 1.21 |
Mean z-score | -2.00 |
Structure conservation index | 0.75 |
SVM decision value | 0.68 |
SVM RNA-class probability | 0.819519 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17863822 94 - 20766785 UGUGCGUUUGUUCUGCCGCCAUUGUUCGGGAUAUCAGAUACACAU--AUCCUGGCACCGAUGGCGGCGUCUGCCAGGAGAGCC-----ACAAAAAAGGCAG ((((.((((.....((((((((((.(((((((((.........))--)))))))...)))))))))).(((....))))))))-----))).......... ( -34.60) >DroSec_CAF1 29136 94 - 1 UGUGCGUUUGUUCUGCCGCCAUUGUUCGGGAUAUCAGAUACACAU--AUCCUGGCACCGAUGGCGGCGUCUGCCAGGAGAGCC-----ACAAAAAAGGCAU .((((.(((((((.((((((((((.(((((((((.........))--)))))))...)))))))))).(((....))))))).-----.....))).)))) ( -34.90) >DroEre_CAF1 31662 97 - 1 UGCGCGUUUGUUCUGCUGCCAUUGUUCGGGAUAUCAGAUACACAU--AUCCUGCCACCGAUGGCGGCGUCUGCCAGGAGGGCCGGGCCACAAAAAAGGC-- .((.(.(((((...((((((((((..((((((((.........))--))))))....))))))))))(((((((.....)).))))).)))))...)))-- ( -35.00) >DroYak_CAF1 27792 101 - 1 UGUGCGCCUGUUCCGCUGCCAUUGUCCGGGAUAUCAGAUACACAUAUAUCCUGCCACCGAUGGCGGCGUCUGCCAGGAGAGGCACUAAAAAAAAAAGGCAG .....((((....(((((((((((..((((((((...........))))))))....)))))))))))..((((......))))...........)))).. ( -37.60) >consensus UGUGCGUUUGUUCUGCCGCCAUUGUUCGGGAUAUCAGAUACACAU__AUCCUGCCACCGAUGGCGGCGUCUGCCAGGAGAGCC_____ACAAAAAAGGCAG .....((((....(((((((((((..((((((...............))))))....)))))))))))(((......)))...............)))).. (-26.56 = -25.56 + -1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:24 2006