Locus 5593

Sequence ID 2R_DroMel_CAF1
Location 17,862,495 – 17,862,605
Length 110
Max. P 0.888242
window8956

overview

Window 6

Location 17,862,495 – 17,862,605
Length 110
Sequences 4
Columns 110
Reading direction reverse
Mean pairwise identity 90.63
Mean single sequence MFE -37.23
Consensus MFE -29.21
Energy contribution -29.28
Covariance contribution 0.06
Combinations/Pair 1.07
Mean z-score -2.26
Structure conservation index 0.78
SVM decision value 0.95
SVM RNA-class probability 0.888242
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17862495 110 - 20766785
AUUGAAAACGGAGGUGGUGUCGUUGCGAUUCAGAGCCAGAGCUUGACCUUCGUUUUUGGGAGCGGAGGAGCAACAAGGAUUCGAAAGGAUUCUUGCGGGACGUUCGGAUG
........((((.((..(((.(((((......((((....))))..(((((((((....))))))))).)))))((((((((....)))))))))))..)).)))).... ( -39.90)
>DroSec_CAF1 27812 109 - 1
AUUGAAAACGGAGGUGGUGUCGUUGCGAUUCACAGCCAGAGCUUGACCUUCGUU-UUGGGAGCGGAGGAGCAACAAGGAUUCGAAAGGAUUCUUGCGGGACGUUCGGAUG
........((((.((..(((.(((((...(((.(((....))))))((((((((-(...))))))))).)))))((((((((....)))))))))))..)).)))).... ( -38.70)
>DroEre_CAF1 30416 103 - 1
AUUGAAAACGGAGGUGGUGUCAUUGCGAUUCG------GAGCUUGACCUUCGUU-CUGGGAGCGGUGGAGCAACAAGGAUUCGAAAGGAUUCUUGCGGGAUGUUCGGUUG
........((((.((.((..((((((..((((------((((.........)))-))))).))))))..))..(((((((((....)))))))))....)).)))).... ( -34.20)
>DroYak_CAF1 26481 103 - 1
AUUGAAAACGGAGGCGGUGUCACUGCGAUUCA------GUGCUUGACCUUCGUU-UUGGGAGCGGUGGAGCAACAAGGAUUCGCAAGGAUUCUUGCGGGAUGUUCGGAUG
..(.(((((((((((((.(.(((((.....))------))))))).))))))))-)).)(((((.....(((...(((((((....))))))))))....)))))..... ( -36.10)
>consensus
AUUGAAAACGGAGGUGGUGUCAUUGCGAUUCA______GAGCUUGACCUUCGUU_UUGGGAGCGGAGGAGCAACAAGGAUUCGAAAGGAUUCUUGCGGGACGUUCGGAUG
..............(((...((((.((.............(((...((((((((......)))))))))))..(((((((((....))))))))))).)))).))).... (-29.21 = -29.28 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:23 2006