Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 17,861,814 – 17,861,926 |
Length | 112 |
Max. P | 0.500000 |
Location | 17,861,814 – 17,861,926 |
---|---|
Length | 112 |
Sequences | 3 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 85.42 |
Mean single sequence MFE | -27.60 |
Consensus MFE | -22.11 |
Energy contribution | -22.00 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.07 |
Mean z-score | -1.60 |
Structure conservation index | 0.80 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17861814 112 - 20766785 AACAAGAAAAACACUGCGGAGAACAAUCGAAUUUUUGGGGGGGAAAAACCACCGCCAGUAAAAUUCGGUCAAUAUUUGUGCGA----GUGUGCGUGGAGUAGGGAAAUUUUUUGGA ..(((((((....((((........(((((((((((((.((((.....)).)).)))..)))))))))).....((..((((.----...))))..)))))).....))))))).. ( -31.40) >DroSec_CAF1 27138 115 - 1 AACAAGAAAAACAGUGCGGAAAACAAUCGAAUUUUCGGGGGGGA-AAACCACCGCAAGUGAAAUUCGGUCAAUAUUUGUGCGAGUGAGUGUGCGUGGAGCAGGGAAAUUUUUUGGA ..(((((((....(..((((.....(((((((((((((.((...-...)).))).....)))))))))).....))))..).......(.(((.....))).)....))))))).. ( -27.50) >DroEre_CAF1 29743 96 - 1 AACAAGAA--------------ACAAUCGAAUUUUCGGGGG-GA-AAACCACCGCCAGUGAAAUUCGGUCAAUAUUUGUGCGA----GUGUGCGUGGAGCAGGGAAAUUUUUUGGA ..((((((--------------(...(((((((((.((.((-..-......)).))...)))))))))((....((..((((.----...))))..)).....))..))))))).. ( -23.90) >consensus AACAAGAAAAACA_UGCGGA_AACAAUCGAAUUUUCGGGGGGGA_AAACCACCGCCAGUGAAAUUCGGUCAAUAUUUGUGCGA____GUGUGCGUGGAGCAGGGAAAUUUUUUGGA ..(((((((.................((((((((((((((........)).))).....)))))))))((....((..((((........))))..)).....))..))))))).. (-22.11 = -22.00 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:21 2006