Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,911,350 – 2,911,464 |
Length | 114 |
Max. P | 0.940521 |
Location | 2,911,350 – 2,911,464 |
---|---|
Length | 114 |
Sequences | 3 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 83.33 |
Mean single sequence MFE | -25.37 |
Consensus MFE | -22.09 |
Energy contribution | -21.87 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.05 |
Mean z-score | -2.11 |
Structure conservation index | 0.87 |
SVM decision value | 1.31 |
SVM RNA-class probability | 0.940521 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2911350 114 - 20766785 CGAAGGUUUCUACCGGCAGCCGUAGAAACAAUAUUAGUAAGUAUUGUAGAAAGAGGAAACAAGAGGACACAGUAGAAACACACACCACUCUAGGUGUGCAGAUAACUUAAACCC ..(((((((((((.(....((......((((((((....)))))))).......(....)....))...).)))))))).((((((......)))))).......)))...... ( -29.80) >DroSec_CAF1 662 96 - 1 CGAAGGUUUCUACCGGCAGCCGUAGAAACAAUAUUAGUAAGUA-----GAAAGAGGAAACU----------GUGUA---UUACACCACCCUAGGUGUGCAGAUAACUUAAAACC .....((((((((.((...))))))))))........(((((.-----...(.((....))----------.)...---.((((((......))))))......)))))..... ( -22.70) >DroSim_CAF1 659 96 - 1 CGAAGGUUUCUACCGGCAGCCGUAGAAACAAUAUUAGUAAGUA-----UAAAGAGGAAACU----------GUGUA---UUACACCACCGUAGGUGUGCAGAUAACUUAAAACC ..(((((((((((.((...))))))))))..((((.((.((((-----((...((....))----------.))))---))(((((......))))))).)))).)))...... ( -23.60) >consensus CGAAGGUUUCUACCGGCAGCCGUAGAAACAAUAUUAGUAAGUA_____GAAAGAGGAAACU__________GUGUA___UUACACCACCCUAGGUGUGCAGAUAACUUAAAACC .....((((((((.((...))))))))))........(((((............(....)....................((((((......))))))......)))))..... (-22.09 = -21.87 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:40 2006