Locus 5586

Sequence ID 2R_DroMel_CAF1
Location 17,856,948 – 17,857,045
Length 97
Max. P 0.992127
window8943

overview

Window 3

Location 17,856,948 – 17,857,045
Length 97
Sequences 5
Columns 97
Reading direction forward
Mean pairwise identity 88.84
Mean single sequence MFE -24.50
Consensus MFE -20.98
Energy contribution -22.18
Covariance contribution 1.20
Combinations/Pair 1.08
Mean z-score -2.25
Structure conservation index 0.86
SVM decision value 2.31
SVM RNA-class probability 0.992127
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17856948 97 + 20766785
CGUCCUGAAAGCCAAAUCCCGAUUAUGUGCACUCAACUGCAAGUCAGCAGGAGCGUGUGUACAUACAUAUAUUUGUUUGGCUACACACACACAUCUC
.........((((((((....(((((((((((.(..((((......))))....).))))))))).))......))))))))............... ( -25.60)
>DroSec_CAF1 24008 95 + 1
CGUCCUGAAAGCCAAAUCCCGAUUAUGUGCACUCAACUGCAAGUCAACAGGAGCGUGUGUACAUACAUAUAUUUGUUUGGCUACACA--CACAUCUC
.........((((((((....(((((((((((.(..(((........)))....).))))))))).))......)))))))).....--........ ( -21.60)
>DroSim_CAF1 24700 95 + 1
CGUCCUGAAAGCCAAAUCCCGAUUAUGUGCACUCAACUGCAAGUCAACAGGAGCGUGUGUACAUACAUAUAUUUGUUUGGCUACACA--CACAUCUC
.........((((((((....(((((((((((.(..(((........)))....).))))))))).))......)))))))).....--........ ( -21.60)
>DroEre_CAF1 26709 82 + 1
-----UGAAAGCCAGAUCCCGAUUAUGUGCACUCAACUGCAAGUCAGCAGGAGCGUGUGCAC----ACAUAUUUGUUUGGCUACACA--CACA----
-----....((((((((...(((..(((((((.(..((((......))))....).))))))----)...))).)))))))).....--....---- ( -26.20)
>DroYak_CAF1 24317 87 + 1
CGUUUCGAAAGCCAGAUCCCGAUUAUGUGCACUCAACUGCAAGUCAGCAGGAGCGUGUGUAC----AUAUAUUUGUUUGGCUACACA--CACA----
.........((((((((......(((((((((.(..((((......))))....).))))))----))).....)))))))).....--....---- ( -27.50)
>consensus
CGUCCUGAAAGCCAAAUCCCGAUUAUGUGCACUCAACUGCAAGUCAGCAGGAGCGUGUGUACAUACAUAUAUUUGUUUGGCUACACA__CACAUCUC
.........((((((((....(((((((((((.(..((((......))))....).)))))))))...))....))))))))............... (-20.98 = -22.18 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:11 2006