Locus 5585

Sequence ID 2R_DroMel_CAF1
Location 17,856,637 – 17,856,756
Length 119
Max. P 0.974447
window8942

overview

Window 2

Location 17,856,637 – 17,856,756
Length 119
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 95.49
Mean single sequence MFE -33.04
Consensus MFE -31.06
Energy contribution -31.06
Covariance contribution 0.00
Combinations/Pair 1.06
Mean z-score -1.54
Structure conservation index 0.94
SVM decision value 1.73
SVM RNA-class probability 0.974447
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17856637 119 - 20766785
AAAGUUAACUAUAAAAACGCAGCAUGGGCAUGUUGGAAAGUUGACAAGCGAUUUUCUGCAACUAUGUCGAUGGCAGACUUGGUCGAAAAGUGGAAGUUUGACAAGCGCUGCGACAGGCA-
.................((((((...(((((((((((((((((.....))))))))..)))).)))))..((.(((((((...(.....)...))))))).))...)))))).......- ( -32.70)
>DroSec_CAF1 23697 119 - 1
AAAGUUAACUAUAAAAACGCAGCAUGGGCAUGUUGGAAAGUUGACAAGCGAUUUUCUGCAACUAUGUCGAUGGCAGACUUGGUCAAAAAGUGGAAGUUUGACAAGCGCUGCGACAGGCA-
.................((((((((.(((((((((((((((((.....))))))))..)))).))))).))....(.((((.(((((.........)))))))))))))))).......- ( -32.70)
>DroSim_CAF1 24389 119 - 1
AAAGUUAACUAUAAAAACGCAGCAUGGGCAUGUUGGAAAGUUGACAAGCGAUUUUCUGCAACUAUGUCGAUGGCAGACUUGGUCGAAAAGUGGAAGUUUGACAAGCGCUGCGACAGGCA-
.................((((((...(((((((((((((((((.....))))))))..)))).)))))..((.(((((((...(.....)...))))))).))...)))))).......- ( -32.70)
>DroEre_CAF1 26402 120 - 1
AAAGUUGGCUAUAAAAACGCAUCAUGGGCAUGUUGGAAAGUUGACAAGCGAUUUUCUGCAACUAUGUCGAUGGCAGACUUGGUCGAAAAGUGGAAGUUCGACGUGCGCUGCGACAGGCGA
.................(((..(((.(((((((((((((((((.....))))))))..)))).))))).)))((((.....((((((.........)))))).....)))).....))). ( -34.70)
>DroYak_CAF1 23992 120 - 1
AAAGUUAACUAUAAAAACGCAUCAUGGCCAUGUUGCAAAGUUGACAAGCGAUUUUCUGCAACUAUGUCGAUGGCAGACUUGGUCGAAAAGUUGAAGUUCGACAAGCGCUGCGACAGGCAA
..........................(((..((((((((((((.....))))))..))))))..(((((.((((.(.((((.(((((.........)))))))))))))))))))))).. ( -32.40)
>consensus
AAAGUUAACUAUAAAAACGCAGCAUGGGCAUGUUGGAAAGUUGACAAGCGAUUUUCUGCAACUAUGUCGAUGGCAGACUUGGUCGAAAAGUGGAAGUUUGACAAGCGCUGCGACAGGCA_
..................((..(((.(((((((((((((((((.....))))))))..)))).))))).)))((((.....((((((.........)))))).....)))).....)).. (-31.06 = -31.06 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:10 2006