Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 17,855,991 – 17,856,111 |
Length | 120 |
Max. P | 0.995256 |
Location | 17,855,991 – 17,856,111 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 90.75 |
Mean single sequence MFE | -58.62 |
Consensus MFE | -48.30 |
Energy contribution | -49.38 |
Covariance contribution | 1.08 |
Combinations/Pair | 1.14 |
Mean z-score | -2.54 |
Structure conservation index | 0.82 |
SVM decision value | 2.56 |
SVM RNA-class probability | 0.995256 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17855991 120 - 20766785 CUUGUGCUCACCCAGCCGAUUGCGUCGCUCCUCCGCCUCCUCCAGACGCUCCUCAUGGGGGCGGGUCGGAAAUGGGCGAUACUUGCGAUGCAGUCCACUGGGGGGAUCACUCCGCACAGG (((((((...(((((..(((((((((((.....(((((..((((..((((((.....))))))..).)))...)))))......)))))))))))..))))).(((....)))))))))) ( -62.30) >DroSec_CAF1 23108 120 - 1 CUUUUGCUCACCCAGCCGAUUGCGUCGCUCCUCCGCCUCCUCCAGACGCUCCUCCUGGGGACGUGUCGGAAAUGGGCGGUACUGGCGGUGCAGUCCACUGGGGGGAUAACUCUGCACAGG (((.(((...(((((..((((((..((((...((((((..(((.(((((((((....)))).))))))))...))))))....))))..))))))..)))))(((....))).))).))) ( -58.00) >DroSim_CAF1 23814 120 - 1 CUUUUGCUCACCCAGCCGAUUGCGGCGCUCCUCCGCCUCCUCCAGACGCUCCUCCUGGGGACGUGUCGGAAAUGGGCGGUACUUGCGGUGCAGUCCACUGGGGGGAUCACUCUGCACAGG (((.(((...(((((..(((((((.(((....((((((..(((.(((((((((....)))).))))))))...)))))).....))).)))))))..)))))(((....))).))).))) ( -57.10) >DroEre_CAF1 25854 120 - 1 CUUUUGCUCGCCCAGCCAGCUGCGUCGCUCCUCCGCCUCCUCCAGACGCUCCUCCUGCGGGCGUGGCGGAGGUGGGCGGUACUUGCGGUGCAGUCCACUGGGAGGCGCACUCCGCACAGG .....(((..(((((...(((((..(((.(((((((((((.((..(((((((....).)))))))).))))))))).)).....)))..)))))...))))).)))((.....))..... ( -58.80) >DroYak_CAF1 23438 120 - 1 CUUUUGCUCACCCAGCCAACUGCGUCGCUCCUCCGCCUCCUCCAGACGCUCCUCCUGGGGGCGUGGCGCAAGUGGGCGGUACUUGCGGUGCAGUCCACUGGGAGGGGCACUCCUCACAGG ....(((((.(((((...(((((..(((....((((((.......(((((((.....))))))).((....)))))))).....)))..)))))...)))))..)))))........... ( -56.90) >consensus CUUUUGCUCACCCAGCCGAUUGCGUCGCUCCUCCGCCUCCUCCAGACGCUCCUCCUGGGGGCGUGUCGGAAAUGGGCGGUACUUGCGGUGCAGUCCACUGGGGGGAUCACUCCGCACAGG (((.(((...(((((..(((((((((((....((((((..(((.(((((((((....)))).))))))))...)))))).....)))))))))))..))))).(((....)))))).))) (-48.30 = -49.38 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:09 2006