Locus 5583

Sequence ID 2R_DroMel_CAF1
Location 17,850,359 – 17,850,450
Length 91
Max. P 0.936562
window8940

overview

Window 0

Location 17,850,359 – 17,850,450
Length 91
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 70.35
Mean single sequence MFE -13.79
Consensus MFE -8.39
Energy contribution -9.42
Covariance contribution 1.03
Combinations/Pair 1.29
Mean z-score -1.65
Structure conservation index 0.61
SVM decision value 1.25
SVM RNA-class probability 0.936562
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17850359 91 - 20766785
UAUUUGGAA-CUACUUAUUGGGUCAACCCGAAUAUGUUUGCCUGCCCCCAAACACCCAAACAGCCC--GA-AA---CCCGAAGCCCCAAGUCCCCC-AA
.((((((..-((.....(((((....)))))...((((((..((........))..))))))....--..-..---.....))..)))))).....-.. ( -16.20)
>DroSec_CAF1 17525 90 - 1
UAUUUGGAA-CUACUUAUUGGGUCAACCCGAAUAUGUUUGCCUGCC-CCAAACACCCAAACACCCA--AA-AA---CCCGAAGCCCCAAGUCCCCC-AA
.((((((..-((.....(((((....)))))...((((((..((..-.....))..))))))....--..-..---.....))..)))))).....-.. ( -15.60)
>DroSim_CAF1 18206 91 - 1
UAUUUGGAA-CUACUUAUUGGGUCGACCCGAAUAUGUUUGCCUGCCCCCAAACACCCAAACACCCA--AA-AA---CCCGAAGCCCCAAGUCCCCC-AA
.((((((..-((.....(((((....)))))...((((((..((........))..))))))....--..-..---.....))..)))))).....-.. ( -15.90)
>DroYak_CAF1 17729 80 - 1
UAUUUGGAA-CUACUUAUUGGGUCAACCCGAAUAUGUUUGCCUGCCCCCAAAAAC----AC-----------A---CCCUAAGCCCCAAGUCCCCCCGA
.((((((..-((.....(((((....)))))...(((((............))))----).-----------.---.....))..))))))........ ( -12.50)
>DroAna_CAF1 17688 98 - 1
UGUUUGGAA-CUACUUAUUGGGUCAGCCCGAAAAUGUCCACCUAUCCCUGAAAACCCAGCCACCCACCGAUAACCAUCCUACAGCCCACCUUACCUCAU
(((..(((.-.......(((((....)))))...((((.........(((......))).........))))....))).)))................ ( -13.37)
>DroPer_CAF1 17403 78 - 1
UAUUUGGACUGUACGUAUUGGAUCAACCUGAAUCAAGUUGCCCCAUCCCACAU--CC---UACCCA--AU-CA---U-------CCCA---CCCAUCGA
.....(((.(((..(...(((..((((.((...)).))))..))).)..))))--))---......--..-..---.-------....---........ (  -9.20)
>consensus
UAUUUGGAA_CUACUUAUUGGGUCAACCCGAAUAUGUUUGCCUGCCCCCAAACACCCAAACACCCA__AA_AA___CCCGAAGCCCCAAGUCCCCC_AA
.((((((..........(((((....)))))...((((((........))))))...............................))))))........ ( -8.39 =  -9.42 +   1.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:08 2006