| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 17,845,383 – 17,845,481 |
| Length | 98 |
| Max. P | 0.895685 |
| Location | 17,845,383 – 17,845,481 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 75.07 |
| Mean single sequence MFE | -16.30 |
| Consensus MFE | -12.23 |
| Energy contribution | -12.45 |
| Covariance contribution | 0.22 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.23 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.99 |
| SVM RNA-class probability | 0.895685 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17845383 98 - 20766785 UGUCAAAUGGAAGAAUUUCAAAUGGAAGCCUCCAGACAAUUGGCCAAAUUG---CAGGGCCACUAAACAAUCCGCAC-------GAACCAA-A--GAACUCGAUAAUG--AAA ((((...((((.(..((((....))))..)))))))))..(((((......---...)))))..............(-------((.....-.--....)))......--... ( -16.40) >DroVir_CAF1 30843 97 - 1 UGUCAAAUGGAAGAAUUUCAAAUGGAAAACUCCCGGCAAUUGGCCAAAUUG---CAGGGCCAUUAAAU------CAAGAAAAAAAAAAGAA-A----AAUCAAAAUUC--AAA ............((((((..(((((......(((.((((((.....)))))---).))))))))....------..............((.-.----..)).))))))--... ( -16.30) >DroPse_CAF1 12890 94 - 1 UGUCAAAUGGAAGAGUUUCAAAUGGAAAGCUCCCGUCAAUUGGCCAAAUUG---CAGGGCCAUUAAA-ACCCCACGC-------GAAACAACA--GAAU--GAUA--C--AAA (((((.((((.((..((((....))))..)).))))....(((((......---...))))).....-.........-------.........--...)--))))--.--... ( -17.70) >DroGri_CAF1 21468 90 - 1 UGUCAAAUGGAAGAAUUUCAAAUGGAAAGCUCCCGGCAAUUGGCCAAAUUAAAUCAGGGCCAUUAAAU------CAC-------AAAUCAC-A----AAUCACAAAU-----A ((((....((.((..((((....))))..)).))))))..(((((............)))))......------...-------.......-.----..........-----. ( -13.40) >DroAna_CAF1 12998 99 - 1 UGUCAAAUGGAAGAAUUUCAAAUGGAAGCCUCCAGACAAUUGGCCAAAUUG---CAGGGCCAUUAA---AUCCGCAU-------GAACCAC-AAAAAAUACAAAGAGAAAAAA ..(((..((((...........((((....))))......(((((......---...)))))....---.))))..)-------)).....-..................... ( -16.30) >DroPer_CAF1 12850 94 - 1 UGUCAAAUGGAAGAGUUUCAAAUGGAAAGCUCCCGUCAAUUGGCCAAAUUG---CAGGGCCAUUAAA-ACCCCACGC-------GAAACAACA--GAAU--GAUA--C--AAA (((((.((((.((..((((....))))..)).))))....(((((......---...))))).....-.........-------.........--...)--))))--.--... ( -17.70) >consensus UGUCAAAUGGAAGAAUUUCAAAUGGAAAGCUCCCGACAAUUGGCCAAAUUG___CAGGGCCAUUAAA____CC_CAC_______GAAACAA_A__GAAUUCAAAAAUC__AAA ((((....(((.(..((((....))))..)))).))))..(((((............)))))................................................... (-12.23 = -12.45 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:07 2006