| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 17,843,251 – 17,843,350 |
| Length | 99 |
| Max. P | 0.738329 |
| Location | 17,843,251 – 17,843,350 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 80.42 |
| Mean single sequence MFE | -38.80 |
| Consensus MFE | -27.40 |
| Energy contribution | -26.43 |
| Covariance contribution | -0.97 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.44 |
| SVM RNA-class probability | 0.738329 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17843251 99 - 20766785 UUCCGGUUGCGGCGUAGUGCCUCUAACGGGACCCGGCGGACUGCAGCACUAUGCCACAACAGAUCGCCGCUCGAGCGGCAACCUCAGGGUAAGUACUU---A------------------ .(((.((((.(((((((((((((....))).....((.....)).)))))))))).)))).....(((((....))))).......))).........---.------------------ ( -40.70) >DroVir_CAF1 28528 102 - 1 UUCCGGUUGCGGCAUAGUGCCCCUAACUGGACCCGGCGGACUGCAGCACUAUGCCACAACAGAUCGGCGAUCGAGUGGCAACUUGCGGGUAAGUCGAACUCC------------------ .....((((.((((((((((.((.....)).....((.....)).)))))))))).))))((.(((((..(((...(....)...)))....))))).))..------------------ ( -37.60) >DroGri_CAF1 18917 100 - 1 UUCCGGUUGCGGCAUAGUGCCACUAACUGGACCCGGCGGACUGCAGCACUAUGCCACAACAGAUCGGCGAUCGAGUGGCAGCCUGCGGGUAAGUCCAACC-------------------- .((((((((.(((.....))).).)))))))......(((((((.(((...((((((....((((...))))..))))))...)))..)).)))))....-------------------- ( -40.00) >DroWil_CAF1 11974 102 - 1 CUCUGGUUGCGGUGUAGUGCCUCUAACUGGACCAGGCGGACUUCAGCACUAUGCCACAACAGAUCGGCGUUCAACCAGCAGCCUUAGGGUAAGUCCUAAUUA------------------ .((((.(((.((((((((((.(((..(((...)))..))).....)))))))))).)))))))..((((((.....))).)))((((((....))))))...------------------ ( -33.30) >DroMoj_CAF1 11667 102 - 1 UUCCGGUUGCGGCAUAGUGCCCCUAACUGGACCCGGCGGACUGCAGCACUAUGCCACAACAGAUCGGCGAUCGAGCGGCAGCUUGCGGGUAAGUUCCACUCC------------------ .....((((.((((((((((.((.....)).....((.....)).)))))))))).)))).((((...))))(((.((.((((((....)))))))).))).------------------ ( -39.40) >DroAna_CAF1 10747 120 - 1 UUCCGGUUGCGGCGUAGUGCCACUGACAGGACCCGGCGGAUUGCAGCACUAUGCCACAACAGAUCGCCGCUCAAGCGGCAGCCUCAGGGUAAGUAACAAUCGAUACCCACUAUAUCCCAC .....((((.((((((((((...((.(((..((....)).))))))))))))))).)))).....(((((....))))).......(((((.(.......)..)))))............ ( -41.80) >consensus UUCCGGUUGCGGCAUAGUGCCACUAACUGGACCCGGCGGACUGCAGCACUAUGCCACAACAGAUCGGCGAUCGAGCGGCAGCCUGAGGGUAAGUCCAACUCA__________________ .(((((((((((((((((((..((....)).((....))......))))))))))......((.......)).....))))))...)))............................... (-27.40 = -26.43 + -0.97)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:06 2006