| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 17,842,945 – 17,843,058 |
| Length | 113 |
| Max. P | 0.584739 |
| Location | 17,842,945 – 17,843,058 |
|---|---|
| Length | 113 |
| Sequences | 5 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 87.65 |
| Mean single sequence MFE | -26.28 |
| Consensus MFE | -16.85 |
| Energy contribution | -16.21 |
| Covariance contribution | -0.64 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.39 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.584739 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17842945 113 + 20766785 UUAUCACAUACU-UGUUGGCACCUUGGAGUGUAAAUUAUAGUCAAUACAGCCUGCAAAGGCAACCUAUCAUAAAUUGAAUUUUCAAUUUGGAUGAAAGCCUGUGAAAACAUGCU ...((((....(-(((.(((......((.((((...)))).))......))).))))((((....((((.((((((((....))))))))))))...))))))))......... ( -27.30) >DroSec_CAF1 10129 114 + 1 UUAUCACAUACUUUGUAGACACCUUGGAGUGUAAAUUACAGUCAAUACAGGCUGCAAAGGCAACCCAUCAUAAAUUGAAUUUUCAAUUUGGAUGAAAGCCUGUGAAAACAUGCU ..........((((((((........((.((((...)))).))........))))))))......((((.((((((((....))))))))))))..(((.(((....))).))) ( -29.89) >DroSim_CAF1 10849 113 + 1 UUAUCACAUACU-UGUAGACACCUUGGAGUGUAAAUUAUAGUCAAUACAGGCUGCAAAGGCAACCCAUCAUAAAUUGAAUUUUAAAUUUGGAUGAAAGCCUGUGAAAACAUGCU ...((((....(-(((((........((.((((...)))).))........))))))((((....((((.((((((........))))))))))...))))))))......... ( -23.99) >DroEre_CAF1 12940 113 + 1 UUAUCACAUACU-CGUAGGCAGCUUCGAGUGUAAGUUACUGUCAAUACAGGUUGCAACAGCAACAUAUCAUAAAUUAAAUUUUCAAUUUAGAUGAAAGCCUGUGAAAACAUGCU (((((..(((((-((.((....)).)))))))(((((.((((....))))(((((....)))))....................))))).))))).(((.(((....))).))) ( -26.90) >DroYak_CAF1 10307 101 + 1 UUAUCACAUACU-CGUAGGCACCU------------UAUUGUCAAUACAGGUUGCAAAGGCAAUCUGUCAUAAAUUAAAUUUUCAAUUUGGAUGAAAGCCUGUGAAAACAUGCU (((((.((....-....((((...------------...))))...(((((((((....)))))))))....................))))))).(((.(((....))).))) ( -23.30) >consensus UUAUCACAUACU_UGUAGGCACCUUGGAGUGUAAAUUAUAGUCAAUACAGGCUGCAAAGGCAACCUAUCAUAAAUUGAAUUUUCAAUUUGGAUGAAAGCCUGUGAAAACAUGCU ..............((((((....................)))..((((((((((....))....((((.((((((........))))))))))..))))))))......))). (-16.85 = -16.21 + -0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:05 2006