| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 2,907,698 – 2,907,798 |
| Length | 100 |
| Max. P | 0.603656 |
| Location | 2,907,698 – 2,907,798 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 70.97 |
| Mean single sequence MFE | -28.42 |
| Consensus MFE | -12.72 |
| Energy contribution | -14.58 |
| Covariance contribution | 1.87 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.45 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.603656 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2907698 100 + 20766785 UAACCAACCACCUGUUGAUAA----AAUCCGCGAGGGAAUUGCCAGUGUGACCCUCGCUCAGCCGGUGAAACGUACCAUCGGGCGGCGAAAAUGUGCACACAAU ........((((.(((((...----.....(((((((..(..(....)..))))))))))))).))))....((((..(((.....)))....))))....... ( -28.30) >DroSec_CAF1 1216 99 + 1 UAACCAA-CACCUGUUGAAAA----AAUCCGCGAGGGAAUUGUCAGUGUGACCCUCGUUCGCCCGGUGAUACUUACCAUCGGGAGGCGAAAUAGUACACGCAUU ....(((-(....))))....----..(((....)))........(((((((..(((((..(((((((........))))))).)))))....)).)))))... ( -29.80) >DroSim_CAF1 1157 99 + 1 UAACCAA-CACCUGUUGAAAA----AAUCCGCGAGGGAAUUGUCAGUGUGACCCUCGCUCGCCCGGUGAUACUUACCAUCGGGAGGCGAAAAAGUGCACGCAUU ....(((-(....))))....----..(((....)))........(((((((..(((((..(((((((........))))))).)))))....)).)))))... ( -32.30) >DroEre_CAF1 1184 95 + 1 UAAUCAA-CACCUGUUGAUAC----AAUCCGCGAGGAACUUAUCAGUGUGACCGUCGCCCGACCGGUGAAACAUACC----GGCGGCGAGUAUGUGUACGCAGU ..(((((-(....))))))..----..(((....)))........(((((..(((((((.(.((((((.....))))----))))))))...))..)))))... ( -32.40) >DroWil_CAF1 848 89 + 1 UGUUAAA-CACCUGUGGCUAAUGGGAAGCC-----GAAAUUGCAAAUGUGACCGUUU---AGCAUAACAAC---AACAAC-AACCGCAAAAAUUUUUG--CAAC (((((((-(.....(((((.......))))-----)...(..(....)..)..))))---)))).......---......-....(((((....))))--)... ( -17.70) >DroYak_CAF1 1203 99 + 1 UAAUCAA-CACCUGUUGAUAC----AAUCCGCGAGGAACUUAUUAGUGUGACCGUCGCUCGACCGGUAAAACAUACUAUCGGGUGGCUAGAAUCUGCACGCAAU ..(((((-(....))))))..----..(((....)))........(((((...(((((((((..((((.....)))).)))))))))(((...))))))))... ( -30.00) >consensus UAACCAA_CACCUGUUGAUAA____AAUCCGCGAGGAAAUUGUCAGUGUGACCCUCGCUCGACCGGUGAAACAUACCAUCGGGCGGCGAAAAUGUGCACGCAAU ...........................(((....)))........(((((....(((((...((((((........))))))..))))).......)))))... (-12.72 = -14.58 + 1.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:39 2006