| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 17,842,201 – 17,842,321 |
| Length | 120 |
| Max. P | 0.639290 |
| Location | 17,842,201 – 17,842,294 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 88.05 |
| Mean single sequence MFE | -44.33 |
| Consensus MFE | -35.61 |
| Energy contribution | -36.83 |
| Covariance contribution | 1.23 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.80 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.507645 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17842201 93 + 20766785 CGGCGGACCAUGACUAUAGAUGCCCCCAGCCGAGGGAAUCGGCGGUGGGGCCGUCGUAGGCGGCGGCAGGAAGUGAUGGUAGUGCUG---CUGCUG (((((((((((.(((.......(((((.(((((.....))))))).)))(((((((....)))))))....))).)))))....)))---)))... ( -46.30) >DroSec_CAF1 9355 96 + 1 CGGCGGACCAUGACUAUAGAUGCCCCCAGCCGAGGGAAUUGGCGGUGGGGCCGUCGUCGGCGGCGGCAGGAAGUGAUGGUAGUGCUGCUGCUGCUG (((((((((((.(((.......(((((.(((((.....))))))).)))(((((((....)))))))....))).)))))((.....)).)))))) ( -44.30) >DroSim_CAF1 10075 96 + 1 CGGCGGACCAUGACUAUAGAUGCCCCCAGCCGAGGGAAUCGGCGGUGGGGCUGUCGUCGGCGGCGGCAGGAAGUGAUGGUAGUGCUGCUGCUGCUG (((((((((((.(((.......(((((.(((((.....))))))).)))(((((((....)))))))....))).)))))((.....)).)))))) ( -44.20) >DroEre_CAF1 9382 93 + 1 CGGCGGACCAUGACUAUAGAUGCCCCCAGCCGAGGGAAUCGGCGGUGGGGCCGUCGUCGGCGGCGGCAGGAAGUGAUGGUAGUGCUG---CUGCUG (((((((((((.(((.......(((((.(((((.....))))))).)))(((((((....)))))))....))).)))))....)))---)))... ( -46.30) >DroYak_CAF1 9499 93 + 1 CGGCGGACCAUGACUGUAGAUGCCCCCAGCCGAGGGUAUCGGCGGUGGGGCCGUCGUCGGUGGCGGCAGGAAGUGAUGGUAGUGCUG---CUGCUG ((((((.((.(.(((((.(((((((.(....).))))))).))))).))))))))).(((..((((((..(........)..)))))---)..))) ( -44.70) >DroAna_CAF1 9834 87 + 1 UGGC---------CCGUAGUUGCCGCCCGCCGUGGGUAUGGGUGGCGGGGCAGUCGUCGGCGGUGGCAGGAAGUGGUGAUAGUGCUGCUGCUGCUG ..((---------((.....(((((((((((...)))..))))))))))))......((((((..((((..(.((....)).).))))..)))))) ( -40.20) >consensus CGGCGGACCAUGACUAUAGAUGCCCCCAGCCGAGGGAAUCGGCGGUGGGGCCGUCGUCGGCGGCGGCAGGAAGUGAUGGUAGUGCUG___CUGCUG (((((.(((((.(((.......(((((.(((((.....))))))).)))(((((((....)))))))....))).)))))..)))))......... (-35.61 = -36.83 + 1.23)
| Location | 17,842,229 – 17,842,321 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 81.70 |
| Mean single sequence MFE | -37.35 |
| Consensus MFE | -22.92 |
| Energy contribution | -22.57 |
| Covariance contribution | -0.36 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.639290 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17842229 92 + 20766785 GCCGAGGGAAUCGGCGGUGGGGCCGUCGUAGGCGGCGGCAGGAAGUGAUGGUAGUGCUG---CUGCUGGAGAUUGGUGUGCGGAUUCGGAU------ACUG (((((.....)))))((.....))(((...((((((((((..(........)..)))))---)))))...))).(((((.((....)).))------))). ( -35.00) >DroSec_CAF1 9383 95 + 1 GCCGAGGGAAUUGGCGGUGGGGCCGUCGUCGGCGGCGGCAGGAAGUGAUGGUAGUGCUGCUGCUGCUGGAGAUUGGUGUGCGGAUUCGGAU------ACUG (((((.....)))))((.....))(((..((((((((((((.(...........).))))))))))))..))).(((((.((....)).))------))). ( -39.20) >DroSim_CAF1 10103 95 + 1 GCCGAGGGAAUCGGCGGUGGGGCUGUCGUCGGCGGCGGCAGGAAGUGAUGGUAGUGCUGCUGCUGCUGGAGAUUGGUGUGCGGAUUCGGAU------ACUG (((((.....))))).........(((..((((((((((((.(...........).))))))))))))..))).(((((.((....)).))------))). ( -39.30) >DroEre_CAF1 9410 92 + 1 GCCGAGGGAAUCGGCGGUGGGGCCGUCGUCGGCGGCGGCAGGAAGUGAUGGUAGUGCUG---CUGCUGGAGAUUGGUGUGCGGAUUCGGAU------ACUG (((((.....)))))((.....))(((..(((((((((((..(........)..)))))---))))))..))).(((((.((....)).))------))). ( -38.20) >DroYak_CAF1 9527 92 + 1 GCCGAGGGUAUCGGCGGUGGGGCCGUCGUCGGUGGCGGCAGGAAGUGAUGGUAGUGCUG---CUGCUGGAGAUUGGUGUGCGGAUUCGGAU------ACUG (((((.....)))))((.....))(((..(((..((((((..(........)..)))))---)..)))..))).(((((.((....)).))------))). ( -35.70) >DroMoj_CAF1 9994 92 + 1 CCCGGUGGUGGCGGCGGCGGUGCGGUCGUGGGUGGCGGCAGAUAAUGAUGCGGCUGAUG---CGCAUGAUG------AUGCGCUUGCAUUUGCAUCUGCUG .(((.((.(.(((((.((...)).))))).).)).)))(((.....(((((((.((..(---(((((....------))))))...)).)))))))..))) ( -36.70) >consensus GCCGAGGGAAUCGGCGGUGGGGCCGUCGUCGGCGGCGGCAGGAAGUGAUGGUAGUGCUG___CUGCUGGAGAUUGGUGUGCGGAUUCGGAU______ACUG .......(((((.(((.....(((((((....)))))))..........(((((........)))))...........))).))))).............. (-22.92 = -22.57 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:04 2006