Locus 5577

Sequence ID 2R_DroMel_CAF1
Location 17,832,763 – 17,832,858
Length 95
Max. P 0.838032
window8933

overview

Window 3

Location 17,832,763 – 17,832,858
Length 95
Sequences 6
Columns 97
Reading direction forward
Mean pairwise identity 75.02
Mean single sequence MFE -29.98
Consensus MFE -18.49
Energy contribution -18.63
Covariance contribution 0.14
Combinations/Pair 1.22
Mean z-score -1.57
Structure conservation index 0.62
SVM decision value 0.74
SVM RNA-class probability 0.838032
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17832763 95 + 20766785
AUCUACAGGAAAAUGAGUCGCCAGUCGACUUGCAGGCUAGUCCUGCUGCUGGCCUUUACCCUGGCCCUAAUCCACGCCAGCCACUCAAAUACCGU--
.......((....(((((.((((((......(((((.....))))).)))))).......(((((..........)))))..)))))....))..-- ( -27.90)
>DroPse_CAF1 1 80 + 1
---------AGAAUGGGUCGCCAGGCGA------GACUGGUGCUGUUGUUGGUCGUGUGCCUUGGGGCGCUACGGGCCAGCCACUCGAGCACCCU--
---------.....((((.(((((....------..)))))(((((.((((((((((((((....))))).)).))))))).))...))))))).-- ( -35.80)
>DroSim_CAF1 1 86 + 1
---------AAAAUGAGUCGCCAGUCGACUUGCAGGCUAGUCCUGCUGCUGGCCUUUACCCUGGCACUCAUCCACGCCAGCCACUCAAAUACCGU--
---------....(((((.((((((......(((((.....))))).)))))).......(((((..........)))))..)))))........-- ( -26.90)
>DroEre_CAF1 1 86 + 1
---------AAAAUGGGUCGCCAGUCGACGUGCAGGCGGGUCCUGCUGCUGGUCUUGAGCCUGGCGGUUAUCCACGCCAGCCACUCAAAUACCGU--
---------...((((...((((((......(((((.....))))).)))))).(((((.((((((........))))))...)))))...))))-- ( -31.90)
>DroYak_CAF1 1 86 + 1
---------AAAAUGGGUCGCCAGUCGACUUGCAGGCUGGUCCUGCUGCUGGCCUUUAGCCUGGCACUAAUCCACGCCAGCCACUCAAACACCGU--
---------....(((((.((((((......(((((.....))))).)))))).....(.(((((..........))))).))))))........-- ( -26.80)
>DroAna_CAF1 379 97 + 1
AUCUUCCGGAGAAUGGGUCGCCAGUCGACUUGCAGGCUGGUCCUGCUGCUGGCCGUCACUCUUUGUGCAAUCCAAGCCAGCCACUCCACCUCCCUAC
.......((((...(((..(((((((........))))))))))...((((((...(((.....)))........))))))..)))).......... ( -30.60)
>consensus
_________AAAAUGGGUCGCCAGUCGACUUGCAGGCUGGUCCUGCUGCUGGCCUUUACCCUGGCACUAAUCCACGCCAGCCACUCAAACACCGU__
.............(((((.(((((((........)))))))......((((((......................)))))).))))).......... (-18.49 = -18.63 +   0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:01 2006