Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 17,831,951 – 17,832,054 |
Length | 103 |
Max. P | 0.776528 |
Location | 17,831,951 – 17,832,054 |
---|---|
Length | 103 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 79.33 |
Mean single sequence MFE | -35.67 |
Consensus MFE | -20.64 |
Energy contribution | -21.03 |
Covariance contribution | 0.39 |
Combinations/Pair | 1.37 |
Mean z-score | -1.97 |
Structure conservation index | 0.58 |
SVM decision value | 0.54 |
SVM RNA-class probability | 0.776528 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17831951 103 + 20766785 AGAG------CGUCGAGUUUU-CAGUCUGGUUUUGAGAAUUUCUUAGAAUCAGCGAGCUGGCAAACGAGUUCAUAAUCG----------GCGUCAAGAAACGCUCAGUGGGGAUUCCCUC .(((------((((((.....-..(.(((((((((((.....))))))))))))(((((.(....).)))))....)))----------))((......))))))...(((....))).. ( -34.80) >DroPse_CAF1 110873 112 + 1 AGAGUUCAUGUGUCGCUUGAU-C-GGCCGGUUCUG--GAUUUCUGGGAACAAGAUAUCUGGAAAACGAGUUCUAAAUUGCUCUAAGGUGGGGUGCAGAGGAGC----UGGGGAUCCCCUG ..(((((.(.((.(((((.((-(-......(((..--(((.((((....).))).)))..)))...((((........))))...))).))))))).).))))----)(((....))).. ( -36.20) >DroSec_CAF1 99940 103 + 1 ACAG------CGUCGAGUUUU-CAGUCUGGUUUUGAGAAUUUCUUAGAACCAGCGAGCUGGCAAACGAGUUCUUAAUUG----------GCGUCAAGAAACGCUCCGUGGGGAUUCCCCC ....------......(((((-(((((((((((((((.....)))))))))))...))))).))))(((((((((...(----------((((......)))))...))))))))).... ( -35.80) >DroSim_CAF1 99265 103 + 1 ACAG------CGUCGAGUUUU-CAGUCUGGUUUUGAGAAUUUCUUAGAACCAGCGAGCUGGCAAACGAGUUCUUAAUUG----------GCGUCAAGAAACGCUCCGUGGGGAUUCCCCC ....------......(((((-(((((((((((((((.....)))))))))))...))))).))))(((((((((...(----------((((......)))))...))))))))).... ( -35.80) >DroEre_CAF1 100460 103 + 1 AGAG------CGUCAAGUUUU-UAGUCUGGUUUUGAGGAUUUCUCAGAACCAGCGAGCGAGCAAACGAGUUAUUAAUUG----------GCGUCAAGAAACGCGCCGUGGGGAUUCCCCG ((((------(.....)))))-..(.(((((((((((.....))))))))))))..(((.((...(((........)))----------((((......)))))))))((((...)))). ( -33.50) >DroYak_CAF1 104423 104 + 1 AGAG------CGUCGGGUUUUCUGGUCUGGUUUUGAGGAUUUCUUAGAACCAGCGAGCUGGCAAACGAGUUAUUAAUUG----------GCGUCAAGAAACGCUCAGUGGGGAUUCCCCG .(((------(((...((((.(..(((((((((((((.....)))))))))))...))..).))))((((((.....))----------)).)).....))))))...((((...)))). ( -37.90) >consensus AGAG______CGUCGAGUUUU_CAGUCUGGUUUUGAGAAUUUCUUAGAACCAGCGAGCUGGCAAACGAGUUCUUAAUUG__________GCGUCAAGAAACGCUCCGUGGGGAUUCCCCC ................((((..(((((((((((((((.....)))))))))))...))))..)))).......................((((......)))).....((((...)))). (-20.64 = -21.03 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:00 2006