Locus 5574

Sequence ID 2R_DroMel_CAF1
Location 17,829,411 – 17,829,502
Length 91
Max. P 0.530380
window8930

overview

Window 0

Location 17,829,411 – 17,829,502
Length 91
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 75.23
Mean single sequence MFE -22.73
Consensus MFE -8.64
Energy contribution -11.09
Covariance contribution 2.45
Combinations/Pair 1.12
Mean z-score -2.06
Structure conservation index 0.38
SVM decision value -0.01
SVM RNA-class probability 0.530380
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17829411 91 + 20766785
----------------CUAGACACUACAAAGUGUCAUUGCGAUUAAACU--AUUUACGUAAACA---UUAACGACUUUAUUUUGAUUGUAAUAGAGCACAUUCGGUGC--------GAAG
----------------...((((((....))))))((((((((((((.(--(....(((.....---...)))....)).))))))))))))...((((.....))))--------.... ( -23.90)
>DroSec_CAF1 97399 91 + 1
----------------CUAGACACUACAAAGUGUCAUUGCGAUUAAACU--AUUUACGUAAACA---UUAACGACUUUAUUUUGAUUGUAAUAGAGCACAUUCGGUGC--------GCAG
----------------...((((((....))))))((((((((((((.(--(....(((.....---...)))....)).)))))))))))).(.((((.....))))--------.).. ( -24.00)
>DroSim_CAF1 96723 91 + 1
----------------CUAGACACUACAAAGUGUCAUUGCGAUUAAACU--AUUUACGUAAACA---UUAACGACUUUAUUUUGAUUGUAAUAGAGCACAUUCGGUGC--------GCAG
----------------...((((((....))))))((((((((((((.(--(....(((.....---...)))....)).)))))))))))).(.((((.....))))--------.).. ( -24.00)
>DroEre_CAF1 97907 91 + 1
----------------CUAGGCACUACAACGAGUCAUAGCGAUUAAACU--AUUUACGUACAGA---CUAACGACUUUAUUUUGAUUGUAAUAGAGCACUUUGUGUGC--------GCAG
----------------....((((.((((.(.((..(((((((((((.(--(....(((.....---...)))....)).)))))))))..))..)).).))))))))--------.... ( -17.50)
>DroYak_CAF1 101753 91 + 1
----------------CUAAACACUACAAAGUGUCAUUGCGAUUAAACU--GUUUACGUAAACA---UUAACGACUUUAUUUUGAUUGUAAUAGAGCACAUUCGGUGC--------GAAG
----------------....(((((....))))).((((((((((((.(--(....(((.....---...)))....)).))))))))))))...((((.....))))--------.... ( -19.20)
>DroPer_CAF1 108568 120 + 1
UAAUCCACACAAGUUUCUAGACUGUAGAAAGUGUCAUAUUGAUUAAUCUGUAUUUAAUUAUAUAUAGCUAAUCAGUUUAGUUGGACUUCAGCAGACAGCGGGCGAGUCGGAAACUAUUUG
...........(((((((.((((((.....(((((..((((((((..((((((........)))))).))))))))...((((.....)))).)))).)..)).)))))))))))..... ( -27.80)
>consensus
________________CUAGACACUACAAAGUGUCAUUGCGAUUAAACU__AUUUACGUAAACA___UUAACGACUUUAUUUUGAUUGUAAUAGAGCACAUUCGGUGC________GCAG
...................((((((....))))))((((((((((((.........(((...........))).......))))))))))))...((((.....))))............ ( -8.64 = -11.09 +   2.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:58 2006