Locus 5571

Sequence ID 2R_DroMel_CAF1
Location 17,797,055 – 17,797,145
Length 90
Max. P 0.600707
window8926

overview

Window 6

Location 17,797,055 – 17,797,145
Length 90
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 76.27
Mean single sequence MFE -23.03
Consensus MFE -12.78
Energy contribution -13.11
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.60
Structure conservation index 0.55
SVM decision value 0.14
SVM RNA-class probability 0.600707
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17797055 90 + 20766785
UCAACUGUCGU-UUGUCUUGGG-------------CGCGUAAUAAAAAGACUUAACAACGCGAGUUGUUUAAUUAUUAUUUAUGACACUC-UCGGCUUUGGCU---------------CG
......((((.-..(((..(((-------------.((((((...........((((((....))))))..........))))).).)))-..)))..)))).---------------.. ( -20.70)
>DroVir_CAF1 97223 81 + 1
UCAGCUGUCGU-UUGUCUUGGG--------------UCGUAAUAAAAAGACUUAACAACGCGAGUUGUUUAAUUAUUAUUUAUGACACUC---------GGCG---------------CU
..(((.((((.-.((((.((((--------------((..........))))))(((((....)))))...............))))..)---------))))---------------)) ( -23.60)
>DroGri_CAF1 89342 95 + 1
UCAACUGUCGU-UUGUCUUGGGCGCGUUCGCUUUGGCCGUAAUAAAAAGACUUAACAACGCGAGUUGUUUAAUUAUUAUUUAUGACACUC---------GGCG---------------CU
......((((.-.((((...(((((....))....)))(((((((........((((((....))))))...)))))))....))))..)---------))).---------------.. ( -23.60)
>DroWil_CAF1 101625 98 + 1
UCAGCUGCCUUUUUGUCUUCGGAUGGUUGG---UACGCGUAAUAAAAAGACUUAACAACGCGAGUUGUUUAAUUAUUAUUUAUGACACU---CGGCUUUCUCC---------------U-
...((((((...(..((....))..)..))---)).))((.(((((((.....((((((....))))))......)).))))).))...---...........---------------.- ( -22.30)
>DroMoj_CAF1 103049 82 + 1
UCAACUGUCGU-UUGUCUUGGG-------------AUCGUAAUAAAAAGACUUAACAACGCGAGUUGUUUAAUUAUUAUUUAUGACACUC---------GGCG---------------CA
......((((.-.((((...((-------------((.(((((..........((((((....))))))..))))).))))..))))..)---------))).---------------.. ( -19.70)
>DroAna_CAF1 72889 106 + 1
UCAACUGUCGU-UUGUCUUGGG-------------CGCGUAAUAAAAAGACUUAACAACGCGAGUUGUUUAAUUAUUAUUUAUGACACUCCUCGGCUCAGACCGAGACCGACACCGAGAC
...........-..(((((((.-------------.((((((...........((((((....))))))..........))))).).....(((((((.....))).))))..))))))) ( -28.30)
>consensus
UCAACUGUCGU_UUGUCUUGGG_____________CGCGUAAUAAAAAGACUUAACAACGCGAGUUGUUUAAUUAUUAUUUAUGACACUC_________GGCG_______________CU
.....((((((...(((((...........................)))))..((((((....))))))............))))))................................. (-12.78 = -13.11 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:54 2006