| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 17,792,611 – 17,792,702 |
| Length | 91 |
| Max. P | 0.542889 |
| Location | 17,792,611 – 17,792,702 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 64.14 |
| Mean single sequence MFE | -14.55 |
| Consensus MFE | -8.26 |
| Energy contribution | -8.03 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.13 |
| Structure conservation index | 0.57 |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.542889 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17792611 91 + 20766785 CAACCUCAUCCUCAAGUACACCGAGGACUUGAACACCAUGCCAUAUAGGUAAGCAUAU---------AAUCCUUU-UUUUUAAACCCUAUAU--AAAAAAACC----- .....((((((((.........)))))..)))..........(((((((.........---------........-.........)))))))--.........----- ( -10.57) >DroGri_CAF1 83096 84 + 1 CAACCUUAUCCUCAAGUACACCGAGGAUCUCAACACCAUGCCCUACCGGUAAGUAAAGGCAGCAGCACAGCCUUA---CUUCAAUUA--------------------- .......((((((.........))))))..........((((.....))))(((((.(((.........))))))---)).......--------------------- ( -15.40) >DroSec_CAF1 60263 87 + 1 CAACCUCAUCCUCAAGUACACCGAGGACUUGAACACCAUGCCGUAUAGGUGAGCAUCU---------UAUCCUUU---UCUGAACCAUAUAU--AA--GAACC----- ....(((.(((((.........)))))............(((.....))))))..(((---------(((.....---............))--))--))...----- ( -12.03) >DroEre_CAF1 61915 81 + 1 CAACCUCAUCCUCAAGUACACCGAGGACCUGAACACCAUGCCGUACAGGUGAGCAUCC-------------------------ACUUCAUAGUUUG--GGGCAUCCAU ...(((((.((((.........))))(((((.((........)).)))))........-------------------------...........))--)))....... ( -17.00) >DroYak_CAF1 64636 95 + 1 CAACCUCAUCCUCAAAUACACCGAGGACCUGAACACCAUGCCCUAUAGGUGAGCAUCU---------AAACCUUU-U-GCUGAACUUUGUAGAUCA--UGACAUUUAA .....((((((((.........)))))..)))....((((..((((((((.((((...---------........-)-)))..)).))))))..))--))........ ( -18.80) >DroAna_CAF1 67526 83 + 1 CAACCUAAUCCUCAAGUACACCGAGGAUCUGAACACCAUGCCCUAUAGGUGAGU-------------UGUACUUUUUUAUUUAACAAUUAAGAUAG------------ (((((..((((((.........))))))..)..((((..........)))).))-------------))...........................------------ ( -13.50) >consensus CAACCUCAUCCUCAAGUACACCGAGGACCUGAACACCAUGCCCUAUAGGUGAGCAUCU_________AAUCCUUU___UUUGAACUAUAUAG__AA____AC______ ........(((((.........)))))...........((((.....))))......................................................... ( -8.26 = -8.03 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:53 2006