| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 2,907,020 – 2,907,139 |
| Length | 119 |
| Max. P | 0.884347 |
| Location | 2,907,020 – 2,907,139 |
|---|---|
| Length | 119 |
| Sequences | 4 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 78.30 |
| Mean single sequence MFE | -26.90 |
| Consensus MFE | -19.76 |
| Energy contribution | -20.20 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.93 |
| SVM RNA-class probability | 0.884347 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2907020 119 + 20766785 CACGCAUGACAAUUCUAAAAUGCCUUUGAAUGAAAUUCCAUCUGAUUGCGGAGGAGUUUCUGUUGGAAGUGUUCCUUGUAGAUGAUAUCUACAUCCAUAUUAAGAUUGGUAUUGUACCG ...(((...((((..(((.(((.((((.(((((((((((.((((....)))))))))))).))).)))).......(((((((...)))))))..))).)))..))))....))).... ( -30.20) >DroSec_CAF1 560 98 + 1 ---------------------UCCUUUGAAUGAAAUUCCAUCCGAUUGCGGAGGAGUUUCUGUUGGAAGUGCUCUUUGUAGAUGAUAUCUACAUCCAUAUUAAGAUUGGAAUUGUACCG ---------------------(((.......((((((((.((((....))))))))))))....))).((((....(((((((...)))))))((((.........))))...)))).. ( -29.00) >DroSim_CAF1 540 98 + 1 ---------------------UCCUUUGAAUGAAAUUCCAUCCGAUUGCGGAGGAGUUUCUGUUGGAAGUGUUCUUUGUAGAUGAUAUCUACAUACAUAUUAAGAUUGGAAUUGUACCG ---------------------((((((.(((((((((((.((((....)))))))))))).))).)))((((....(((((((...))))))).)))).........)))......... ( -27.40) >DroYak_CAF1 536 99 + 1 -----------------AAAUUCCUUUGAAUGGAAUUACAUCCGACUGCGG---AGUUUCUGUUGUAAGAGCUCAUUGUAGAUAGUAUUUACAUCGGUAUUAGGAAUGCUAUUGAAUCG -----------------.((((((.......)))))).....(((((((.(---((((.((......)))))))...))))(((((((((.............)))))))))....))) ( -21.02) >consensus _____________________UCCUUUGAAUGAAAUUCCAUCCGAUUGCGGAGGAGUUUCUGUUGGAAGUGCUCUUUGUAGAUGAUAUCUACAUCCAUAUUAAGAUUGGAAUUGUACCG .......................((((.(((((((((((.((((....)))))))))))).))).)))).......(((((((...))))))).......................... (-19.76 = -20.20 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:38 2006