Locus 5567

Sequence ID 2R_DroMel_CAF1
Location 17,788,382 – 17,788,489
Length 107
Max. P 0.616069
window8922

overview

Window 2

Location 17,788,382 – 17,788,489
Length 107
Sequences 6
Columns 114
Reading direction forward
Mean pairwise identity 79.39
Mean single sequence MFE -41.47
Consensus MFE -28.29
Energy contribution -29.65
Covariance contribution 1.36
Combinations/Pair 1.04
Mean z-score -1.28
Structure conservation index 0.68
SVM decision value 0.17
SVM RNA-class probability 0.616069
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17788382 107 + 20766785
ACGCCCUGGAGCGAGAUUGUUCAGACGGCGCUCCAGAGGCUCGGCUACUCCCAGGAGGUGGCCAACACAGCCAGAGGUGAGUGC----UUCAUC---CUAGCUUAGAUUGUGCC
..(((((((((((....(((....))).)))))))).)))..((((((((....)).))))))..((((((.((.((((((...----))))))---)).))......)))).. ( -41.20)
>DroVir_CAF1 84678 101 + 1
ACGCCCUGGAGCGAAAUAGUCCAGACGGCGCUGCAGCGUCUCGGGUACUCGCAGGAGGUGGCCAACACGGCAAGAGGUGAGUGC----UAGAAU---UUGGUUAAGA------C
..((((((((.(......))))))..(((((....)))))((.(((((((((........(((.....))).....))))))))----).))..---..))).....------. ( -33.82)
>DroSec_CAF1 56066 107 + 1
ACGCCCUGGAGCGAGAUUGUCCAGACGGCGCUCCAGAGGCUCGGCUACUCCCAGGAGGUGGCCAACACAGCCAGAGGUGAGAGC----UCCAUC---CUAGCUUAUAAUGUGGC
..(((((((((((....(((....))).)))))))).)))..((((((((....)).))))))......((((.(..((.((((----(.....---..))))).)).).)))) ( -43.60)
>DroEre_CAF1 57863 109 + 1
ACGCCCUGGAGCGAGAUUGUCCAGACGGCCCUCCAGCGGCUGGGCUACUCCCAGGAGGUGGCCAACACAGCCAGAGGUGAGUGU----GCCAGGACAUCAGCUG-CAAGGAGCC
..((((((.(((..(((.((((...((((((....).)))))((((((((((.((..(((.....)))..))...)).))))).----))).))))))).))).-).))).)). ( -47.40)
>DroYak_CAF1 60195 113 + 1
ACGCCCUGGAGCGAGAUUGUACAGACGGCGCUCCAGAGGCUGGGCUACUCCCAGGAGGUGGCCAACACAGCCAGAGGUGAGUGACUUGACCAUGACACCAGCUU-CAAGAAGCU
.((((((((((((....(((....))).)))))))).(((((((((((((....)).))))))....)))))...))))(((..(((((...((....))...)-))))..))) ( -45.90)
>DroAna_CAF1 58257 100 + 1
ACGCCCUGGAGCGAGAUUGUCCAGACCGCCCUGCAGAGGCUCGGCUACUCCCAGGAGGUGGCCAACACAGCCAGAGGUGGGUUA--------UC---UCAGCUAA---CCAGCC
.....((((((((((((..(((..(((((((....).)))..((((.(((....)))(((.....)))))))...))))))..)--------))---)).)))..---)))).. ( -36.90)
>consensus
ACGCCCUGGAGCGAGAUUGUCCAGACGGCGCUCCAGAGGCUCGGCUACUCCCAGGAGGUGGCCAACACAGCCAGAGGUGAGUGC____UCCAUC___CCAGCUUACAAGGAGCC
.((((((((((((....(((....))).)))))))).((((.((((((((....)).)))))).....))))...))))................................... (-28.29 = -29.65 +   1.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:50 2006