Locus 5565

Sequence ID	2R_DroMel_CAF1
Location	17,778,925 – 17,779,015
Length	90
Max. P	0.892418

overview

Window 0

Location	17,778,925 – 17,779,015
Length	90
Sequences	5
Columns	92
Reading direction	forward
Mean pairwise identity	84.43
Mean single sequence MFE	-16.84
Consensus MFE	-11.88
Energy contribution	-12.20
Covariance contribution	0.32
Combinations/Pair	1.11
Mean z-score	-2.27
Structure conservation index	0.71
SVM decision value	0.97
SVM RNA-class probability	0.892418
Prediction	RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17778925 90 + 20766785
ACUGUCAAGUCGCAUUUGUCAACAAAGGCUACAGCCGCACAC--ACACACCAGUACACAAGUACACCAGUACACCAGUACACCAGCGCACUG
.......(((.((.((((....))))(((....)))((....--........((((....))))....((((....))))....))))))). ( -18.70)
>DroSec_CAF1 46686 84 + 1
ACUGUCAAGUCGCAUUUGUCAACAAAGGCUACAGCCGCACACUCACACACCAGUACACAAGUACACCAGUACACC--------AGCACACUG
((((....((.((.((((....))))(((....)))))))............((((....))))..)))).....--------......... ( -15.10)
>DroSim_CAF1 46551 92 + 1
ACUGUCAAGUCGCAUUUGUCAACAAAGGCUACAGCCGCACACUCACACACCAGUACACAAGUACACCAGUACACCAGCACACCAGCACACUG
((((....((.((.((((....))))(((....)))))))............((((....))))..))))......((......))...... ( -16.50)
>DroEre_CAF1 48497 84 + 1
ACUGUCAAGUCGCAUUUGUCAACGAAGGCUACAGCCGCACACACACACACCAGU--------GCACCAGUACACCAGUACACCAGCACACUG
........((.((.((((....))))(((....)))))))............((--------((....((((....))))....)))).... ( -17.30)
>DroYak_CAF1 50196 80 + 1
ACUGUCAAGUCGCAUUUGUCAACAAAGGCUACUGCCGCACACACACACAC------------ACAUCAGUACACAAGUACAACAGUACACUG
(((((...((.((.((((....))))(((....)))))))..........------------......((((....)))).)))))...... ( -16.60)
>consensus
ACUGUCAAGUCGCAUUUGUCAACAAAGGCUACAGCCGCACACACACACACCAGUACACAAGUACACCAGUACACCAGUACACCAGCACACUG
((((....((.((.((((....))))(((....)))))))............((((....))))..))))...................... (-11.88 = -12.20 +   0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:48 2006