| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 17,772,593 – 17,772,683 |
| Length | 90 |
| Max. P | 0.946891 |
| Location | 17,772,593 – 17,772,683 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 98.23 |
| Mean single sequence MFE | -16.98 |
| Consensus MFE | -15.50 |
| Energy contribution | -15.70 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.91 |
| SVM decision value | 1.32 |
| SVM RNA-class probability | 0.941866 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17772593 90 + 20766785 CUUAUUGUUGCCGUCAUUUGGCAUUGCCAUUGCCGUUUUUGUUAUUAUUGUCAUUUAACAUUGCCAUUUCCAACAUU-UCGAACAGCUGCA ........(((((.....))))).(((....((.((((.((((.....((.((........)).)).....))))..-..)))).)).))) ( -13.30) >DroSec_CAF1 40300 90 + 1 CUUAUUGUUGCCGUCAUUUGGCAUUGCCAUUGCUGUUUUUGUUAUUAUUGUCAUUUAACAUUGCCAUUUCCAACAUU-UCGAACAGCUGCA ........(((((.....))))).(((....(((((((.((((.....((.((........)).)).....))))..-..))))))).))) ( -17.90) >DroSim_CAF1 40146 90 + 1 CUUAUUGUUGCCGUCAUUUGGCAUUGCCAUUGCUGUUUUUGUUAUUAUUGUCAUUUAACAUUGCCAUUUCCAACAUU-UCGAACAGCUGCA ........(((((.....))))).(((....(((((((.((((.....((.((........)).)).....))))..-..))))))).))) ( -17.90) >DroEre_CAF1 42090 90 + 1 CUUAUUGUAGCCGUCAUUUGGCAUUGCCAUUGCUGUUUUUGUUAUUAUUGUCAUUUAACAUUGCCAUUUGCAACAUU-UCGAACAGCUGCA .........((((.....))))..(((....(((((((.(((((...........)))))((((.....))))....-..))))))).))) ( -18.60) >DroYak_CAF1 43455 91 + 1 CUUAUUGUUGCCGUCAUUUGGCAUUGCCAUUGCUGUUUUUGUUAUUAUUGUCAUUUAACAUUGCCAUUUCCAACAUUUUCGAACAGCUGCA ........(((((.....))))).(((....(((((((.((((.....((.((........)).)).....)))).....))))))).))) ( -17.20) >consensus CUUAUUGUUGCCGUCAUUUGGCAUUGCCAUUGCUGUUUUUGUUAUUAUUGUCAUUUAACAUUGCCAUUUCCAACAUU_UCGAACAGCUGCA .........((((.....))))..(((....(((((((.((((.....((.((........)).)).....)))).....))))))).))) (-15.50 = -15.70 + 0.20)
| Location | 17,772,593 – 17,772,683 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 98.23 |
| Mean single sequence MFE | -16.98 |
| Consensus MFE | -15.88 |
| Energy contribution | -15.92 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.94 |
| SVM decision value | 1.37 |
| SVM RNA-class probability | 0.946891 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17772593 90 - 20766785 UGCAGCUGUUCGA-AAUGUUGGAAAUGGCAAUGUUAAAUGACAAUAAUAACAAAAACGGCAAUGGCAAUGCCAAAUGACGGCAACAAUAAG (((.((((((...-..((((......)))).((((....))))...........))))))....))).((((.......))))........ ( -16.00) >DroSec_CAF1 40300 90 - 1 UGCAGCUGUUCGA-AAUGUUGGAAAUGGCAAUGUUAAAUGACAAUAAUAACAAAAACAGCAAUGGCAAUGCCAAAUGACGGCAACAAUAAG (((.((((((...-..((((......)))).((((....))))...........))))))....))).((((.......))))........ ( -16.70) >DroSim_CAF1 40146 90 - 1 UGCAGCUGUUCGA-AAUGUUGGAAAUGGCAAUGUUAAAUGACAAUAAUAACAAAAACAGCAAUGGCAAUGCCAAAUGACGGCAACAAUAAG (((.((((((...-..((((......)))).((((....))))...........))))))....))).((((.......))))........ ( -16.70) >DroEre_CAF1 42090 90 - 1 UGCAGCUGUUCGA-AAUGUUGCAAAUGGCAAUGUUAAAUGACAAUAAUAACAAAAACAGCAAUGGCAAUGCCAAAUGACGGCUACAAUAAG ((.(((((((...-((((((((.....))))))))...........................((((...))))...))))))).))..... ( -18.80) >DroYak_CAF1 43455 91 - 1 UGCAGCUGUUCGAAAAUGUUGGAAAUGGCAAUGUUAAAUGACAAUAAUAACAAAAACAGCAAUGGCAAUGCCAAAUGACGGCAACAAUAAG (((.((((((......((((......)))).((((....))))...........))))))....))).((((.......))))........ ( -16.70) >consensus UGCAGCUGUUCGA_AAUGUUGGAAAUGGCAAUGUUAAAUGACAAUAAUAACAAAAACAGCAAUGGCAAUGCCAAAUGACGGCAACAAUAAG (((.((((((......((((......)))).((((....))))...........))))))....))).((((.......))))........ (-15.88 = -15.92 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:43 2006