Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,901,231 – 2,901,341 |
Length | 110 |
Max. P | 0.616471 |
Location | 2,901,231 – 2,901,341 |
---|---|
Length | 110 |
Sequences | 6 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 80.90 |
Mean single sequence MFE | -29.72 |
Consensus MFE | -22.42 |
Energy contribution | -22.48 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.32 |
Mean z-score | -1.28 |
Structure conservation index | 0.75 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.616471 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2901231 110 + 20766785 UCCAUUGGAUCCGCAGCUGGCCAAAAUGCUGAUUGCCAGCUGCCAACAUAACUGCUCUAAUGAAAUACUUUCCAUAACGGCCAUGUUGUCGGGUGAGAUAAAACACAAAU---- ..(((((((...(((((((((.............)))))))))...((....)).))))))).....((((((((((((....)))))).))).))).............---- ( -28.32) >DroGri_CAF1 2994 114 + 1 UCCACUGGAUCCACAAUUGGCCAAAAUGCUGAUAGCCAGCUGUCAGCACAACUGCUCCAAUGAGAUACUCUCAAUAACGGCUAUGCUGUCGGGUGAGGCACUAACUAAAUGCGC ..((((.(((...((..(((((....(((((((((....)))))))))............((((.....)))).....)))))))..))).))))..(((.........))).. ( -33.40) >DroWil_CAF1 3090 109 + 1 CCCGUUGGAUCCACAAUUGGCCAAAAUGCUGAUAGCCAGUUGCCAGCAUAAUUGCUCCAAUGAGAUACUAUCCAUAACGGCCAUGUUGUCGGGUGAGAUAUA-UAUAUAU---- ...(((..((((((((((((((...((((((.(((....))).)))))).....(((....)))..............))))).))))).))))..)))...-.......---- ( -28.20) >DroMoj_CAF1 2971 110 + 1 UCCGCUCGAUCCGCAAUUGGCUAAGAUGCUGAUAGCCAGCUGCCAGCACAAUUGCUCCAAUGAGAUACUUUCAAUUACGGCCAUGCUGUCGGGUGAGAAACAAACUAAAC---- (((((((((...((.((..((......))..)).))((((.(((((((....))))....(((((...))))).....)))...))))))))))).))............---- ( -31.70) >DroAna_CAF1 2860 110 + 1 UCCCUUGGAUCCCCAGCUGGCCAAGAUGCUGAUAGCCAGUUGUCAGCACAAUUGUUCCAACGAAAUCCUUUCUAUUACGGCGAUGCUGUCGGGUGAGAUGAAAUAAAAAA---- ...(((..((((.(((((.(((....(((((((((....)))))))))...((((....))))...............))).).))))..))))))).............---- ( -27.80) >DroPer_CAF1 4997 110 + 1 CCCCCUGGAUCCGCAGCUCGCCAAGAUGCUGAUAGCCAGCUGCCAGCACAACUGCUCCAACGAGAUACUUUCCAUAACGGCCAUGCUGUCGGGUGAGAAAAACUAGCAAC---- ....(((((((((((((..(((....(((((.(((....))).)))))......(((....)))..............)))...)))).)))))........))))....---- ( -28.90) >consensus UCCACUGGAUCCGCAACUGGCCAAAAUGCUGAUAGCCAGCUGCCAGCACAACUGCUCCAAUGAGAUACUUUCCAUAACGGCCAUGCUGUCGGGUGAGAUAAAAUAUAAAU____ ........((((((((((((((....(((((.(((....))).)))))......(((....)))..............))))).))))).)))).................... (-22.42 = -22.48 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:37 2006