Locus 5557

Sequence ID 2R_DroMel_CAF1
Location 17,749,281 – 17,749,379
Length 98
Max. P 0.569459
window8908

overview

Window 8

Location 17,749,281 – 17,749,379
Length 98
Sequences 6
Columns 111
Reading direction forward
Mean pairwise identity 83.06
Mean single sequence MFE -23.13
Consensus MFE -16.24
Energy contribution -17.93
Covariance contribution 1.70
Combinations/Pair 1.19
Mean z-score -1.70
Structure conservation index 0.70
SVM decision value 0.07
SVM RNA-class probability 0.569459
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17749281 98 + 20766785
-------------GGUUAUUAACUUGACUUGUGCUGGGGAAUUAAUUAAGUUCUUCUAUUUGAAAGCUGAAAUUACAAGCCAAAUAGACGUGUAUCUGUGUGGCACAUAAA
-------------(((((......)))))((((((..((((((.....))))))((((((((...(((.........))))))))))).............)))))).... ( -20.50)
>DroSec_CAF1 17104 98 + 1
-------------GGUUAUUAACUUGACUUGUGCUGGGGAAUUAAUUAAGUUCUUCUAUUUGGAAGCUAAAAUUACAAGCCACAUAGAUGUGUAUCUGUGUGGCACAUAAA
-------------.((((......))))(((((..((((((((.....))))))))......................(((((((((((....))))))))))).))))). ( -26.60)
>DroSim_CAF1 16903 98 + 1
-------------GGUUAUUAACUUGACUUGUGCUGGGGAAUUAAUUAAGUUAUUCUAUUUGGAAGCUGAAAUAACAAGCCACAUAGAUGUGUAUCUGUGUGGCACAUAAA
-------------.(((((((((((((...((........))...))))))).((((....)))).....))))))..(((((((((((....)))))))))))....... ( -25.80)
>DroEre_CAF1 18076 98 + 1
-------------GGUUAUUAACUUGACUUGUGCUGGGGAAUUAAUUAAGUUCUUCUAUUUGGAAGCUGAUAUUACAAGCCACAUAGAUGUGUAUCUGUGUGGCACAUAAA
-------------.((((......))))(((((..((((((((.....))))))))((((.(....).)))).)))))(((((((((((....)))))))))))....... ( -26.80)
>DroYak_CAF1 18979 98 + 1
-------------GGUUAUUAACUUGACUUGUGCUGGGGAAUUAAUUAAGUUCUUCUAUUUGGAAGCUGAAAUUACAAGCCACAUGGUUGUGUAUCUGUGUGCCACAUAAA
-------------.((((......))))(((((..((((((((.....))))))))....(((..((.((...((((((((....)))).)))))).))...)))))))). ( -19.40)
>DroAna_CAF1 17175 108 + 1
UUCACCACCAAAAAGCUACUAUGUUGUCUUUUGAUGAGGAAUUAAUUAAAUUUCUCUAUUCAGGAUCUGAAAUUACAUGUCGCAUUAAAAUGUAUGUUU---CAACAUAAA
...................((((((...((((((.((((((((.....))))))))...))))))...((((((((((...........))))).))))---))))))).. ( -19.70)
>consensus
_____________GGUUAUUAACUUGACUUGUGCUGGGGAAUUAAUUAAGUUCUUCUAUUUGGAAGCUGAAAUUACAAGCCACAUAGAUGUGUAUCUGUGUGGCACAUAAA
..............((((......))))(((((..((((((((.....))))))))......................((((((((((......)))))))))).))))). (-16.24 = -17.93 +   1.70)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:36 2006