| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 17,746,760 – 17,746,860 |
| Length | 100 |
| Max. P | 0.984026 |
| Location | 17,746,760 – 17,746,860 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 74.83 |
| Mean single sequence MFE | -23.15 |
| Consensus MFE | -11.71 |
| Energy contribution | -11.93 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.27 |
| Mean z-score | -2.47 |
| Structure conservation index | 0.51 |
| SVM decision value | 1.96 |
| SVM RNA-class probability | 0.984026 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17746760 100 + 20766785 UAAGCACCAAGCACCCAGCAC-CCACC-A-CCCCCUCCGCUUUCAAUUACCUCAAGUGGUAAAUGUGGUUAUUCCAUUUAAUCAUAAGGUGCGACUGGUCCAA ...(.((((.(((((......-.....-.-................(((((......))))).((((((((.......)))))))).)))))...)))).).. ( -23.80) >DroSec_CAF1 14591 93 + 1 UAAGCA-------CCCAGCAC-CCAUC-A-CCCCCUCCGCUUUCAAUUACCUCAAGUGGUAAAUGUGGUUAUUCCAUUUAAUCAUAAGGUGCGACUGGUCCAA ...(.(-------((..((((-(....-.-................(((((......))))).((((((((.......)))))))).)))))....))).).. ( -22.10) >DroEre_CAF1 15491 75 + 1 UCA----------------------------CCCCUCCGCUUUCAAUUACCUCAAGUGGUAAAUGUGGUUAUUCCAUUUAAUCAUAAGGUGCGACUGGUCCAA ..(----------------------------((..(((((((....(((((......))))).((((((((.......))))))))))))).))..))).... ( -17.70) >DroYak_CAF1 16445 96 + 1 UAAGCACAAACCACCCAGC-----ACC-A-CCCGCUCCGCUUUCAAUUACCUCAAGUGGUAAAUGUGGUUAUUCCAUUUAAUCAUAAGGUGCGACUGGUCCAA .................(.-----(((-(-..(((.((........(((((......))))).((((((((.......)))))))).)).)))..)))).).. ( -23.90) >DroMoj_CAF1 24087 81 + 1 C----------------------CAUGUCGCUCAAGUCGCUUUCAAUUACCUCAAGUGCUAAAUGUGGUUAUUCCAUUUAAUCACGGGCGGGGCCAGCCCCAA .----------------------......((((.((.(((((...........)))))))....(((((((.......)))))))))))((((....)))).. ( -24.00) >DroAna_CAF1 14861 99 + 1 --AGAACCAUCCACCCACCACUCCAGC-U-CCCGCGGUGCUUUCAAUUACCUCAAGUGGUAAAUGUGGUUAUUCCAUUUAAUCAGGAGGUGCGACUGGUCCAA --.(.((((((((((.(((((...(((-.-((...)).))).....(((((......)))))..)))))...(((.........))))))).)).)))).).. ( -27.40) >consensus UAAGCA_______CCCAGC____CACC_A_CCCCCUCCGCUUUCAAUUACCUCAAGUGGUAAAUGUGGUUAUUCCAUUUAAUCAUAAGGUGCGACUGGUCCAA ...............................((..(((((((....(((((......))))).((((((((.......))))))))))))).))..))..... (-11.71 = -11.93 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:35 2006