| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 17,725,101 – 17,725,200 |
| Length | 99 |
| Max. P | 0.529504 |
| Location | 17,725,101 – 17,725,200 |
|---|---|
| Length | 99 |
| Sequences | 3 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 84.56 |
| Mean single sequence MFE | -18.47 |
| Consensus MFE | -14.40 |
| Energy contribution | -14.40 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.78 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.529504 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17725101 99 - 20766785 UUAGGAUGAGUCGGAUGAGCAGGAAGAGCCGGAAGAGCCGAAAGAGCCGGAAGAGCAGCAGAAAGAGUUCACUGUUCGGCAAUAAAAAGGGUAAAAAAU .........(((....((((((...(((((....).(((....).(((....).)).)).......)))).)))))))))................... ( -20.40) >DroSec_CAF1 4073 87 - 1 CUAGGAUAAGUCGGAUGAGCCGGAAGA---------GCCGGAAGAGCAGGAAGAGCAGCAGAAAGAGUUCUAAGUUCGGCAA---GAUGGGUAAAAAAU .........(((((((...((((....---------.))))..........(((((..........)))))..)))))))..---.............. ( -17.50) >DroSim_CAF1 4160 87 - 1 CUAGGAUAAGUCGGAUGAGCCGGAAGA---------GCCGGAAGAGCAGGAAGAGCAGCAGAAAGAGUUCUAAGUUCGGCAA---GAUGGGUAAAAAAU .........(((((((...((((....---------.))))..........(((((..........)))))..)))))))..---.............. ( -17.50) >consensus CUAGGAUAAGUCGGAUGAGCCGGAAGA_________GCCGGAAGAGCAGGAAGAGCAGCAGAAAGAGUUCUAAGUUCGGCAA___GAUGGGUAAAAAAU .........(((((((....................(((....).)).....((((..........))))...)))))))................... (-14.40 = -14.40 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:33 2006