Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 17,724,303 – 17,724,415 |
Length | 112 |
Max. P | 0.996101 |
Location | 17,724,303 – 17,724,415 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 96.62 |
Mean single sequence MFE | -19.96 |
Consensus MFE | -18.06 |
Energy contribution | -18.46 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -2.08 |
Structure conservation index | 0.90 |
SVM decision value | 2.65 |
SVM RNA-class probability | 0.996101 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17724303 112 + 20766785 ACGUUAACGAUAUACAGUAUCUAUAGCUAAAGCCCUAGCGAUACCGAUACCGGUAGCUAUACCAUAACUAUAAAACUAACUUUAAAUCUAGCAACUGACU-AACUGACAAACC .((....)).....((((...((((((....((....))..(((((....)))))))))))...........................((((....).))-)))))....... ( -16.30) >DroSec_CAF1 3264 112 + 1 ACGUUAACGAUAUACAGUAGCUAUAGCUAAAGCCCUAGCGAUAGCGAUACCGGUAGCUAUACCAUAACUAUAAAACUAACUUUAAAUCUAGCAACUGACU-AACUGACAAACC ..((((........((((.((((..((((..((....))..))))......((((....)))).........................)))).))))...-...))))..... ( -20.44) >DroSim_CAF1 3359 112 + 1 ACGUUAACGAUAUACAGUAGCUAUAGCUAAAGCCCUAGCGAUAGCGAUACCGGUAGCUAUACCAUAACUAUAAAACUAACUUUAAAUCUAGCAACUGACU-AACUGACAAACC ..((((........((((.((((..((((..((....))..))))......((((....)))).........................)))).))))...-...))))..... ( -20.44) >DroEre_CAF1 4340 112 + 1 AUGUUAACGAUAUACAGUAGCUAUAGCUAAAGCCCUAGCCAUAGCGAUACCGGUAGCUAUACCAUAACUAUAAAAUUAAAUUUAAAUCUAGCAACUGACU-AACUGACAAACC .(((((........((((.((((..((((..((....))..))))......((((....)))).........................)))).))))...-...))))).... ( -20.24) >DroYak_CAF1 3427 113 + 1 AUGUUAACGAUAUACAGUAGCUAUAGCUAAAGCCCUAGCGUUAGCGAUACCGGUAGCUAUACCAUAACUAUAAAAUUAAAUUUAAAUCUAGCAACUGACUUAACUGACAAACC .(((((........((((.((((..(((((.((....)).)))))......((((....)))).........................)))).)))).......))))).... ( -22.36) >consensus ACGUUAACGAUAUACAGUAGCUAUAGCUAAAGCCCUAGCGAUAGCGAUACCGGUAGCUAUACCAUAACUAUAAAACUAACUUUAAAUCUAGCAACUGACU_AACUGACAAACC ..((((........((((.((((..((((..((....))..))))......((((....)))).........................)))).)))).......))))..... (-18.06 = -18.46 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:32 2006