| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 17,722,189 – 17,722,299 |
| Length | 110 |
| Max. P | 0.795912 |
| Location | 17,722,189 – 17,722,299 |
|---|---|
| Length | 110 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 82.30 |
| Mean single sequence MFE | -22.84 |
| Consensus MFE | -17.72 |
| Energy contribution | -18.16 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.60 |
| SVM RNA-class probability | 0.795912 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17722189 110 + 20766785 AAACUC--------AA--CUCAACCUUCGUAACUCUGGAACCAGUUUUGUACAAUAAGGGAUUAAAAGUGCCCUAUUGUAUAUAACUGCAACUGCUAACUCAGGGUUCGUUUGAAAUCCA ......--------..--.((((....((.((((((((....((((.(((((((((.(((((.....)).)))))))))))).))))((....))....)))))))))).))))...... ( -27.90) >DroSec_CAF1 1175 102 + 1 AAA-----------AA--CUCAACCUCUGUAACUCUGGAACCAGUUUUGUACAAUAAGGGAUUAAAAGUGCCCUAUUGUAUAUAACUGCAAC-----GUUCAAGGUUCGUUUGAAAUCCA ..(-----------((--(..(((((.((.(((..((....(((((.(((((((((.(((((.....)).)))))))))))).)))))))..-----)))))))))).))))........ ( -24.80) >DroSim_CAF1 1233 102 + 1 AAA-----------AA--CUCAACCUCUGUAACUCUGGAACCAGUUUUGUACAAUAAGGGAUUAAAAGUGCCCUAUUGUAUAUAACUGCAAC-----GUUCAAGUUUCGUUUGAAAUCCA ...-----------..--..................(((..(((((.(((((((((.(((((.....)).)))))))))))).)))))....-----.((((((.....)))))).))). ( -23.30) >DroEre_CAF1 2176 118 + 1 AAAAAAAAAAAAAAAAUCCAUAGCCUCUGUAACUCCGGAACCAGUUUUGCACAGUAAGGGAUUAAA-GUGCCUGUUUGUACGUAACUGCAAC-GCUAACUCAAGGUUCGUUAGAAAUCCA ....................((((.((((......))))..(((((.((.((((..(((.((....-)).)))..)))).)).)))))....-))))......(((((....)))..)). ( -19.50) >DroYak_CAF1 1251 108 + 1 AA-----------AAAUCCAUAACCUCUGUAACUCUGGAACCAGUUUUGCACAAUAAGGGAUUAAAUGUGCCCUUUUGUAUGUAACUGCUAC-ACUAACUCAAGGUUCGUUAGAAAUCCA ..-----------.......................(((..(((((.(..((((.(((((((.....)).)))))))))..).)))))....-.(((((.........)))))...))). ( -18.70) >consensus AAA___________AA__CUCAACCUCUGUAACUCUGGAACCAGUUUUGUACAAUAAGGGAUUAAAAGUGCCCUAUUGUAUAUAACUGCAAC__CUAACUCAAGGUUCGUUUGAAAUCCA ....................................(((..(((((.(((((((((.((.((.....)).)).))))))))).))))).................(((....))).))). (-17.72 = -18.16 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:31 2006