| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 17,718,188 – 17,718,302 |
| Length | 114 |
| Max. P | 0.649993 |
| Location | 17,718,188 – 17,718,302 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 83.04 |
| Mean single sequence MFE | -47.50 |
| Consensus MFE | -30.45 |
| Energy contribution | -32.82 |
| Covariance contribution | 2.36 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.34 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.649993 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17718188 114 - 20766785 GGUUCCUCCCAGCGGCAGUUAGUACUCCCAAUCCUGCUCCUUCUGGCCUUGGCCGGAACAGCACUGUGUGGAGUACAGGAGGUGCACAACGUUCUGGAGUUGACAGGACAGGCA .((.(((((.(((....))).(((((((((....((((..(((((((....))))))).))))...)).))))))).))))).)).....((((((.......))))))..... ( -46.90) >DroSec_CAF1 27899 114 - 1 CGUUCCUCCCAGCGGAAGUUAGUACUCCCAUUCCUGCUCCUUCUGGCCUUGGCCGGAACAGCACUGAGUGGUGUACAGGAGGUCCACAACGUUCUGGAGUUGACAGGACAGGCA .(..(((((.(((....))).((((..((((((.((((..(((((((....))))))).))))..)))))).)))).)))))..).....((((((.......))))))..... ( -48.20) >DroSim_CAF1 27694 114 - 1 GGUUCCUCCCAGCGGCAGUUAGUACUCCCAUUCCUGCUCCUUCUGGCAUUGGCCGGAACAGCACUGAGUGGUGUACAGGAGGUCCACAACGUUCUGGAGUUGACAGGACGGGCA ((..(((((.(((....))).((((..((((((.((((..(((((((....))))))).))))..)))))).)))).))))).))....(((((((.......))))))).... ( -47.00) >DroEre_CAF1 27554 114 - 1 GGCUCCUCCCAGCAGCAGUUAGUGCUCCCGAUCCUGCUGCUUCUGGCCUUGGCCGGAACAGCACUAAGUGGAGUACAGGAGGUGCACGACGUUUUGGAGUUGACAGGACGGGCG .((.(((((.(((....))).((((((((.....(((((.(((((((....))))))))))))....).))))))).))))).)).((.(((((((.......)))))))..)) ( -51.80) >DroYak_CAF1 28422 114 - 1 GGCUCCUCCCAGCGGCAGUUAGUACUCCCGAUGCUGCUCCUUCUGGCCUUGGCCGGAACAGCACUAAGUGGAGUAAAGGAGGUGCACAACGUUCUGGAGUUGACAGGACGUGCA .((.(((((.(((....)))..(((((((..(((((....(((((((....))))))))))))....).))))))..))))).))...((((((((.......))))))))... ( -49.00) >DroAna_CAF1 22218 114 - 1 CUUUCCUCCAAGAAGCACCUUAUCCUCCCAUUCGUUGGGCUACUGGCCUUGGCCGGGUUGGCCCUUGCCGGAGUCGAGGAAAUCCAUAACGUGUUGGAGCUGACUGGAAAAGCA ((((..((((...(((......(((((...((((..(((((((((((....)))))..))))))....))))...)))))..((((........)))))))...)))))))).. ( -42.10) >consensus GGUUCCUCCCAGCGGCAGUUAGUACUCCCAAUCCUGCUCCUUCUGGCCUUGGCCGGAACAGCACUGAGUGGAGUACAGGAGGUCCACAACGUUCUGGAGUUGACAGGACAGGCA ....(((((.(((....))).(((((((......((((...((((((....))))))..))))......))))))).)))))........((((((.......))))))..... (-30.45 = -32.82 + 2.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:30 2006