| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 17,715,551 – 17,715,671 |
| Length | 120 |
| Max. P | 0.888127 |
| Location | 17,715,551 – 17,715,671 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 90.58 |
| Mean single sequence MFE | -26.65 |
| Consensus MFE | -19.82 |
| Energy contribution | -20.66 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.34 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.95 |
| SVM RNA-class probability | 0.888127 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17715551 120 + 20766785 CUUACAACUGCAGUGAUACCGAACGAACUACAACGAUCCCGUCUAAUUUCCAGGUCUUAUAUGCCCUGCACCGGAUUAUUGCAUUCAAAACAAGGAAUACCUAAAAUUAGGUUUAUUCCC ........(((((((((.(((...(((.....(((....))).....)))((((.(......).))))...))))))))))))..........((((((((((....)))))..))))). ( -28.20) >DroSec_CAF1 25231 120 + 1 CUUACAACUGCAGUGAUAUCCAACUAACUAUAGCGAUUCCGUCUAAUUUCCAGGUCUUAUAUGCCCUGCCCCGGAUUAUUGCAUUCCAAACAAGGAAUACCUAAAAUUAGGUUUAUUCCC ........((((((((..(((.........(((((....)).))).....((((.(......).))))....)))))))))))..........((((((((((....)))))..))))). ( -26.20) >DroSim_CAF1 25020 120 + 1 CUUACAACUGCAGUGAUACCGAACUAACUAUAGCGAUCCCGUCUAAUUUCCAGGUCUUAUAUGCCCUGCCCCGGAUUAUUGCAUUCCAAACAAGGAAUACCUAAAAUUAGGUUUAUUCCC ........(((((((((.(((.........(((((....)).))).....((((.(......).))))...))))))))))))..........((((((((((....)))))..))))). ( -29.10) >DroEre_CAF1 24948 119 + 1 CUUACAACUGCAGUGAUACCGAACUAACUACACCGCACCUGGCUAGUUUCCAGGUCUUAUAUGCACUGC-CCGGAUUAUUGCAUUCAAAACAAGGGUAACCUAAAAUUAGGUUUAUUCCU ........(((((((((.(((..(............((((((.......))))))............).-.)))))))))))).........((((.((((((....))))))...)))) ( -29.25) >DroYak_CAF1 25767 120 + 1 CUUACAACUGCAGUGAUACCGAUCUAACUACACCGAAGUUGUCUAAUUUCCCGGUCUUAUAUGCACUGCACCGGAUUAUUGCAUUCAAAACAAGGGUUACCUAAAAUUAGCUUUAUUCCC ........(((((((((.(((.............((((((....)))))).(((((......).))))...)))))))))))).........(((....))).................. ( -20.50) >consensus CUUACAACUGCAGUGAUACCGAACUAACUACACCGAUCCCGUCUAAUUUCCAGGUCUUAUAUGCCCUGCACCGGAUUAUUGCAUUCAAAACAAGGAAUACCUAAAAUUAGGUUUAUUCCC ........(((((((((.(((...........(((....)))........((((.(......).))))...))))))))))))..........((((((((((....)))))..))))). (-19.82 = -20.66 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:29 2006