| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 2,900,380 – 2,900,480 |
| Length | 100 |
| Max. P | 0.998004 |
| Location | 2,900,380 – 2,900,480 |
|---|---|
| Length | 100 |
| Sequences | 3 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 71.77 |
| Mean single sequence MFE | -23.20 |
| Consensus MFE | -12.94 |
| Energy contribution | -12.94 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.52 |
| Structure conservation index | 0.56 |
| SVM decision value | 2.98 |
| SVM RNA-class probability | 0.998004 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2900380 100 + 20766785 -------A--------AAUGCUUCGUAUUUGCUUUAAUGGUAUUGUAAUCAUUCAAGUGUUUACGACUUUUGAAUAUGAUCCUAUUCAAUGCCGGAAAA-GACGCAUUCGCUUUUU -------.--------(((((.(((((..(((((.((((((......)))))).)))))..)))))...(((((((......)))))))..........-...)))))........ ( -21.70) >DroSec_CAF1 2268 107 + 1 AAGUUUCAAUAAUAUUUAUGCUUCGUAUUUGCUUCGAUGGGAUUGUAAUCAUUCAAGUGU---------UUGAAUAUGAUCCUAUUCAAUGCCAGAAAUACCUGCAUACACUUAUU ................(((((...((((((((((.((((((((..((.(((..(....).---------.))).))..)))))))).)).))...))))))..)))))........ ( -25.20) >DroSim_CAF1 2208 92 + 1 ------------------------AUAUUUGCUUCGAUGGGAUUGUAAUCAUUCAAGUGUUUACGACAUUUGAAUAUGAUCCUAUUCAAUGCCAGAAAUACCUGCAUACACUUUUU ------------------------...........((((((((..((....((((((((((...))))))))))))..))))))))..((((.((......))))))......... ( -22.70) >consensus _______A_________AUGCUUCGUAUUUGCUUCGAUGGGAUUGUAAUCAUUCAAGUGUUUACGAC_UUUGAAUAUGAUCCUAUUCAAUGCCAGAAAUACCUGCAUACACUUUUU ...................................((((((((..((.(((...................))).))..))))))))..((((.((......))))))......... (-12.94 = -12.94 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:36 2006